1700048F04Rik Gene Detail

Summary

• Symbol
  1700048F04Rik
• Name
  RIKEN cDNA 1700048F04 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920646
  NCBI Gene: 73396
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:126005833-126029697 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 64.51 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  780 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920646	lncRNA gene	Chr5:126003625-126034032 (+)
129S1/SvImJ	ENSMUSG00200031593	lncRNA gene	Chr5:119739325-119763074 (+)
A/J	ENSMUSG00195013113	lncRNA gene	Chr5:119261093-119284838 (+)
AKR/J	ENSMUSG00220047215	lncRNA gene	Chr5:118755113-118778979 (+)
BALB/cJ	ENSMUSG00180040093	lncRNA gene	Chr5:119375950-119399694 (+)
C3H/HeJ	ENSMUSG00175034371	lncRNA gene	Chr5:121361183-121385039 (+)
C57BL/6NJ	ENSMUSG00215044199	lncRNA gene	Chr5:119417409-119441274 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006198	lincRNA gene	Chr5:118890709-118913975 (+)
CAST/EiJ	ENSTCUG00005041404	lncRNA gene	Chr5:118648846-118672750 (+)
CBA/J	ENSMUSG00210010562	lncRNA gene	Chr5:120112037-120135899 (+)
DBA/2J	ENSMUSG00185008587	lncRNA gene	Chr5:123163181-123187060 (+)
FVB/NJ	ENSMUSG00205046510	lncRNA gene	Chr5:119044623-119068491 (+)
JF1/MsJ	ENSUMUG00000053045	lncRNA gene	Chr5:126035555-126059478 (+)
LP/J	ENSMUSG00230048268	lncRNA gene	Chr5:127261059-127284805 (+)
NOD/ShiLtJ	ENSMUSG00190047412	lncRNA gene	Chr5:119037472-119061321 (+)
NZO/HlLtJ	ENSMUSG00225014619	lncRNA gene	Chr5:134956454-134980326 (+)
PWK/PhJ	ENSLUMG00010043896	lncRNA gene	Chr5:117938795-117967890 (+)
SPRET/EiJ	ENSMSPG00010032433	lncRNA gene	Chr5:121226593-121250438 (+)
WSB/EiJ	ENSIUOG00005020756	lncRNA gene	Chr5:121744272-121768117 (+)

Homology

• Gene Tree
  1700048F04Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 1700048F04Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1

• Ensembl
  ENSMUSG00000105274 (Evidence)
• NCBI Gene
  73396

Representative Sequences			Length	Strain/Species
genomic	73396	NCBI Gene Model | MGI Sequence Detail	23865	C57BL/6J
transcript	NR_166411	RefSeq | MGI Sequence Detail	1068	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 15

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700048F04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr48952	Chr5:126005829-126005843 (+)	3 bp