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1700049E22Rik Gene Detail
Summary
  • Symbol
    1700049E22Rik
  • Name
    RIKEN cDNA 1700049E22 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1920645
    NCBI Gene: 73395
  • Alliance
    genome feature page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:100504361-100510387 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    331 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920645
 lncRNA gene Chr6:100504281-100510659 (+)
129S1/SvImJ ENSMUSG00200020621
 lncRNA gene Chr6:97501847-97508163 (+)
A/J ENSMUSG00195002275
 lncRNA gene Chr6:97200997-97207323 (+)
AKR/J ENSMUSG00220022476
 lncRNA gene Chr6:96116991-96123307 (+)
BALB/cJ ENSMUSG00180010322
 lncRNA gene Chr6:97585313-97591632 (+)
C3H/HeJ ENSMUSG00175016728
 lncRNA gene Chr6:79835360-79841677 (-)
C57BL/6NJ ENSMUSG00215013345
 lncRNA gene Chr6:97581805-97588125 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0006400
 lincRNA gene Chr6:96457563-96463488 (+)
CAST/EiJ ENSTCUG00005001411
 lncRNA gene Chr6:97587342-97593822 (+)
CBA/J ENSMUSG00210003925
 lncRNA gene Chr6:97390876-97397193 (+)
DBA/2J ENSMUSG00185026538
 lncRNA gene Chr6:97872651-97878969 (+)
FVB/NJ ENSMUSG00205012406
 lncRNA gene Chr6:96583155-96589406 (+)
JF1/MsJ ENSUMUG00000002069
 lncRNA gene Chr6:96748535-96754941 (+)
LP/J ENSMUSG00230013731
 lncRNA gene Chr6:99062023-99068343 (+)
NOD/ShiLtJ ENSMUSG00190002811
 lncRNA gene Chr6:97045474-97051790 (+)
NZO/HlLtJ no annotation
PWK/PhJ ENSLUMG00010016088
 lncRNA gene Chr6:96194340-96200769 (+)
SPRET/EiJ ENSMSPG00010018999
 lncRNA gene Chr6:98598502-98604873 (+)
WSB/EiJ ENSIUOG00005002933
 lncRNA gene Chr6:97979553-97985792 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    48
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 73395 NCBI Gene Model | MGI Sequence Detail 6027 C57BL/6J ±  kb
transcript NR_040525 RefSeq | MGI Sequence Detail 507 ZRU/MplStud  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
References
more
  • Summaries
    All 14
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:386463 Rias E, et al., Protocol for isolation of total RNA from mouse whole cochlea using organic solvents. STAR Protoc. 2026 Mar 20;7(1):104376
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory