1700047K16Rik Gene Detail

Summary

• Symbol
  1700047K16Rik
• Name
  RIKEN cDNA 1700047K16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920585
  NCBI Gene: 73335
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:58204173-58215274 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 36.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  251 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920585	lncRNA gene	Chr11:58204173-58215274 (+)
129S1/SvImJ	ENSMUSG00200037039	lncRNA gene	Chr11:55211743-55213193 (+)
A/J	ENSMUSG00195042316	lncRNA gene	Chr11:55145735-55147185 (+)
AKR/J	ENSMUSG00220050729	lncRNA gene	Chr11:55307918-55309368 (+)
BALB/cJ	ENSMUSG00180050411	lncRNA gene	Chr11:55227909-55229359 (+)
C3H/HeJ	ENSMUSG00175050351	lncRNA gene	Chr11:55181009-55182459 (+)
C57BL/6NJ	ENSMUSG00215040137	lncRNA gene	Chr11:55004227-55005678 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013309	unclassified non-coding RNA gene	Chr11:53158478-53159914 (+)
CAST/EiJ	ENSTCUG00005047869	lncRNA gene	Chr11:54721506-54722957 (+)
CBA/J	ENSMUSG00210040337	lncRNA gene	Chr11:55032392-55033842 (+)
DBA/2J	ENSMUSG00185044316	lncRNA gene	Chr11:55217300-55218750 (+)
FVB/NJ	ENSMUSG00205051183	lncRNA gene	Chr11:55085160-55086610 (+)
JF1/MsJ	ENSUMUG00000052577	lncRNA gene	Chr11:55567103-55568554 (+)
LP/J	ENSMUSG00230050542	lncRNA gene	Chr11:56418259-56419709 (+)
NOD/ShiLtJ	ENSMUSG00190051311	lncRNA gene	Chr11:55271380-55272830 (+)
NZO/HlLtJ	ENSMUSG00225033380	lncRNA gene	Chr11:58434041-58435491 (+)
PWK/PhJ	ENSLUMG00010037824	lncRNA gene	Chr11:55025018-55026468 (+)
SPRET/EiJ	ENSMSPG00010041387	lncRNA gene	Chr11:55811179-55812617 (+)
WSB/EiJ	ENSIUOG00005039676	lncRNA gene	Chr11:55073629-55075079 (+)

Homology

• Gene Tree
  1700047K16Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 1700047K16Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  604
• Tissues
  4
• cDNA Data
  1
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000087347 (Evidence)
• NCBI Gene
  73335

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087347	Ensembl Gene Model | MGI Sequence Detail	11102	C57BL/6J
transcript	ENSMUST00000145068	Ensembl | MGI Sequence Detail	962	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 1

  Primer pair 1

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Developmental Gene Expression 1

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:356411 Bao J, et al., Expression profiling reveals developmentally regulated lncRNA repertoire in the mouse male germline. Biol Reprod. 2013 Nov;89(5):107