Ccdc30 MGI Mouse Gene Detail - MGI:1920582 - coiled-coil domain containing 30

Symbol

Ccdc30
Name

coiled-coil domain containing 30
Synonyms

1700001O02Rik, 1700041C02Rik, 1700111D19Rik, 4930445I03Rik

Feature Type

protein coding gene
IDs

MGI:1920582
NCBI Gene: 73332
Alliance

genome feature page
Transcription Start Sites

11 TSS

Sequence Map

Chr4:119179665-119272718 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 4, 55.35 cM, cytoband D1
Mapping Data

2 experiments

SNPs within 2kb

2910 from dbSNP Build 142
Strain Annotations

23

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920582	protein coding gene	Chr4:119179663-119272718 (-)
129S1/SvImJ	ENSMUSG00200012205	protein coding gene	Chr4:113113817-113121573 (-)
129S1/SvImJ	ENSMUSGG00200054480	protein coding gene	Chr4:113129320-113143082 (-)
129S1/SvImJ	ENSMUSGG00200054606	protein coding gene	Chr4:113084469-113095298 (-)
A/J	ENSMUSGG00195055076	protein coding gene	Chr4:114375485-114389255 (-)
A/J	ENSMUSGG00195055022	protein coding gene	Chr4:114330622-114341457 (-)
A/J	ENSMUSG00195030316	protein coding gene	Chr4:114359983-114367749 (-)
AKR/J	no annotation
BALB/cJ	ENSMUSGG00180055126	protein coding gene	Chr4:112393926-112404790 (-)
BALB/cJ	ENSMUSG00180040922	protein coding gene	Chr4:112423312-112430972 (-)
BALB/cJ	ENSMUSGG00180055568	protein coding gene	Chr4:112437483-112451238 (-)
C3H/HeJ	ENSMUSGG00175054644	protein coding gene	Chr4:113407103-113417969 (-)
C3H/HeJ	ENSMUSGG00175054733	protein coding gene	Chr4:113450660-113464414 (-)
C3H/HeJ	ENSMUSG00175022165	protein coding gene	Chr4:113436492-113444146 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0026398	protein coding gene	Chr4:109880587-109968176 (-)
CAST/EiJ	no annotation
CBA/J	ENSMUSGG00210054731	protein coding gene	Chr4:113013595-113024457 (-)
CBA/J	ENSMUSG00210051540	protein coding gene	Chr4:113042980-113050640 (-)
CBA/J	ENSMUSGG00210054566	protein coding gene	Chr4:113057153-113070907 (-)
DBA/2J	ENSMUSGG00185057544	protein coding gene	Chr4:114610472-114624242 (-)
DBA/2J	ENSMUSG00185044903	protein coding gene	Chr4:114594969-114602739 (-)
DBA/2J	ENSMUSGG00185057542	protein coding gene	Chr4:114565613-114576447 (-)
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	ENSMUSGG00230055844	protein coding gene	Chr4:117947085-117960847 (-)
LP/J	ENSMUSGG00230055779	protein coding gene	Chr4:117902238-117913067 (-)
LP/J	ENSMUSG00230042720	protein coding gene	Chr4:117931586-117939342 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Human Ortholog

CCDC30, coiled-coil domain containing 30

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

CCDC30, coiled-coil domain containing 30
Synonyms

PFD6L, PFDN6L
Links

HGNC:26103

NCBI Gene ID: 728621

UniProt: Q5VVM6
Chr Location

1p34.2; chr1:42456107-42657190 (+) GRCh38

MGI Vertebrate Homology

Ccdc30 stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: CCDC30
Gene Tree

Ccdc30

less

Phenotype Summary

1 phenotype from 1 allele in 1 genetic background
17 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

16
Chemically induced (other)

2
Endonuclease-mediated

2
Gene trapped

8
Radiation induced

1
Targeted

3
Genomic Mutations

4 involving Ccdc30
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

44 strains or lines available

less

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

less

Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

609
Tissues

2
cDNA Data

18
Literature Summary

1

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase ccdc30

less

All Sequences

155
RefSeq

29
UniProt

20
CCDS

CCDS38861.1, CCDS57292.1, CCDS89819.1, CCDS89820.1, CCDS89822.1

Ensembl

ENSMUSG00000028637 (Evidence)
NCBI Gene

73332

			Length	Strain/Species	Flank
genomic	73332	NCBI Gene Model \| MGI Sequence Detail	93054	C57BL/6J	± kb
transcript	NM_029286	RefSeq \| MGI Sequence Detail	3891	C57BL/6
polypeptide	Q8BVF4	UniProt \| EBI \| MGI Sequence Detail	654	Not Applicable

less

UniProt

20 Sequences
Protein Ontology

PR:000012577 prefoldin subunit 6-like protein

(term hierarchy)
InterPro Domains

IPR052825 Coiled-coil domain-containing protein Prefoldin subunit beta-like

IPR031476 Protein of unknown function DUF4686

less

All nucleic 19

cDNA 18

Primer pair 1

Microarray probesets 9

less

MGI:1921234, MGI:1921544, MGI:1922685

Summaries

All 39

Developmental Gene Expression 1

Phenotypes 17
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

TSS for Ccdc30:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr43119	Chr4:119272691-119272719 (-)	13 bp
Tssr43118	Chr4:119272668-119272684 (-)	42 bp
Tssr43117	Chr4:119272640-119272656 (-)	70 bp
Tssr43116	Chr4:119261981-119262029 (-)	10,713 bp
Tssr43115	Chr4:119241025-119241036 (-)	31,687 bp
Tssr43114	Chr4:119241002-119241007 (-)	31,713 bp
Tssr43113	Chr4:119240929-119240977 (-)	31,765 bp
Tssr43112	Chr4:119217097-119217114 (-)	55,612 bp
Tssr43111	Chr4:119217079-119217094 (-)	55,631 bp
Tssr43110	Chr4:119216983-119217007 (-)	55,723 bp
Tssr43108	Chr4:119190816-119190829 (-)	81,895 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 09/15/2026 MGI 6.29