1700042O10Rik Gene Detail

Summary

• Symbol
  1700042O10Rik
• Name
  RIKEN cDNA 1700042O10 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920571
  NCBI Gene: 73321
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:11818123-11835321 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 7.12 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  89 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920571	lncRNA gene	Chr11:11818123-11835321 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002921	antisense lncRNA gene	Chr11:9167231-9184253 (+)
A/J	MGP_AJ_G0002898	antisense lncRNA gene	Chr11:8846759-8864209 (+)
AKR/J	MGP_AKRJ_G0002879	antisense lncRNA gene	Chr11:9214705-9233589 (+)
BALB/cJ	MGP_BALBcJ_G0002886	antisense lncRNA gene	Chr11:8864445-8882194 (+)
C3H/HeJ	MGP_C3HHeJ_G0002841	antisense lncRNA gene	Chr11:9118748-9136908 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003028	antisense lncRNA gene	Chr11:9479891-9499512 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002570	antisense lncRNA gene	Chr11:8387826-8404692 (+)
CAST/EiJ	MGP_CASTEiJ_G0002813	antisense lncRNA gene	Chr11:9135224-9153365 (+)
CBA/J	MGP_CBAJ_G0002838	antisense lncRNA gene	Chr11:10159334-10179394 (+)
DBA/2J	MGP_DBA2J_G0002845	antisense lncRNA gene	Chr11:8777471-8795221 (+)
FVB/NJ	MGP_FVBNJ_G0002864	antisense lncRNA gene	Chr11:8688734-8706503 (+)
LP/J	MGP_LPJ_G0002920	antisense lncRNA gene	Chr11:9274702-9291735 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002852	antisense lncRNA gene	Chr11:9877441-9895929 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003031	antisense lncRNA gene	Chr11:9237512-9256608 (+)
PWK/PhJ	MGP_PWKPhJ_G0002771	antisense lncRNA gene	Chr11:8816000-8835001 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002720	antisense lncRNA gene	Chr11:9081864-9099265 (+)
WSB/EiJ	MGP_WSBEiJ_G0002842	antisense lncRNA gene	Chr11:9000423-9019316 (+)

Homology

• Gene Tree
  1700042O10Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  36
• Gene trapped
  36
• Find Mice (IMSR)
  22 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  714
• Tissues
  6
• cDNA Data
  1
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000086391 (Evidence)
• NCBI Gene
  73321

Representative Sequences			Length	Strain/Species
genomic	73321	NCBI Gene Model | MGI Sequence Detail	17199	C57BL/6J
transcript	NR_045178	RefSeq | MGI Sequence Detail	1091	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 1

  Primer pair 2

  
  

  Microarray probesets 2

References

• Summaries
  All 14

  Developmental Gene Expression 1

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:308675 Prickett AR, et al., Imprinted Gene Expression and Function of the Dopa Decarboxylase Gene in the Developing Heart. Front Cell Dev Biol. 2021;9:676543