1700042O10Rik Gene Detail

Summary

• Symbol
  1700042O10Rik
• Name
  RIKEN cDNA 1700042O10 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920571
  NCBI Gene: 73321
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:11818123-11835321 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 7.12 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  510 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920571	lncRNA gene	Chr11:11818070-11835331 (+)
129S1/SvImJ	ENSMUSG00200034965	lncRNA gene	Chr11:8846230-8863453 (+)
A/J	ENSMUSG00195024370	lncRNA gene	Chr11:8722889-8740098 (+)
AKR/J	ENSMUSG00220009446	lncRNA gene	Chr11:8753167-8770372 (+)
BALB/cJ	ENSMUSG00180028771	lncRNA gene	Chr11:8731518-8748715 (+)
C3H/HeJ	ENSMUSG00175010319	lncRNA gene	Chr11:8740214-8757423 (+)
C57BL/6NJ	ENSMUSG00215035493	lncRNA gene	Chr11:8728525-8745732 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002570	antisense lncRNA gene	Chr11:8387826-8404692 (+)
CAST/EiJ	ENSTCUG00005040128	lncRNA gene	Chr11:8781042-8798050 (+)
CBA/J	ENSMUSG00210018511	lncRNA gene	Chr11:8716486-8733720 (+)
DBA/2J	ENSMUSG00185018905	lncRNA gene	Chr11:8814369-8831592 (+)
FVB/NJ	ENSMUSG00205039076	lncRNA gene	Chr11:8738821-8755998 (+)
JF1/MsJ	ENSUMUG00000049371	lncRNA gene	Chr11:9006028-9023193 (+)
LP/J	ENSMUSG00230035362	lncRNA gene	Chr11:9882467-9899658 (+)
NOD/ShiLtJ	ENSMUSG00190042925	lncRNA gene	Chr11:8740838-8758051 (+)
NZO/HlLtJ	ENSMUSG00225033104	lncRNA gene	Chr11:11898596-11915787 (+)
PWK/PhJ	ENSLUMG00010019727	lncRNA gene	Chr11:8703600-8720912 (+)
SPRET/EiJ	ENSMSPG00010009123	lncRNA gene	Chr11:8702868-8726158 (+)
WSB/EiJ	ENSIUOG00005007857	lncRNA gene	Chr11:8716310-8733578 (+)

Homology

• Gene Tree
  1700042O10Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  36
• Gene trapped
  36
• Find Mice (IMSR)
  22 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  605
• Tissues
  6
• cDNA Data
  1
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000086391 (Evidence)
• NCBI Gene
  73321

Representative Sequences			Length	Strain/Species
genomic	73321	NCBI Gene Model | MGI Sequence Detail	17199	C57BL/6J
transcript	NR_045178	RefSeq | MGI Sequence Detail	1091	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 1

  Primer pair 2

  
  

  Microarray probesets 2

References

• Summaries
  All 15

  Developmental Gene Expression 1

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:308675 Prickett AR, et al., Imprinted Gene Expression and Function of the Dopa Decarboxylase Gene in the Developing Heart. Front Cell Dev Biol. 2021;9:676543