1700031C06Rik Gene Detail

Summary

• Symbol
  1700031C06Rik
• Name
  RIKEN cDNA 1700031C06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920539
  NCBI Gene: 73289
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:70526981-70538735 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  383 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920539	lncRNA gene	Chr14:70526981-70538735 (+)
129S1/SvImJ	ENSMUSG00200031184	lncRNA gene	Chr14:58919316-58931276 (+)
A/J	ENSMUSG00195015644	lncRNA gene	Chr14:59100013-59111766 (+)
AKR/J	ENSMUSG00220033881	lncRNA gene	Chr14:58435746-58447501 (+)
BALB/cJ	ENSMUSG00180035593	lncRNA gene	Chr14:58708575-58720328 (+)
C3H/HeJ	ENSMUSG00175041106	lncRNA gene	Chr14:60469064-60480823 (+)
C57BL/6NJ	ENSMUSG00215030821	lncRNA gene	Chr14:58645245-58657002 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039687	lncRNA gene	Chr14:60350854-60362811 (+)
CBA/J	ENSMUSG00210040483	lncRNA gene	Chr14:59084898-59096648 (+)
DBA/2J	ENSMUSG00185024037	lncRNA gene	Chr14:64254482-64266243 (+)
FVB/NJ	ENSMUSG00205039191	lncRNA gene	Chr14:58595172-58606933 (+)
JF1/MsJ	ENSUMUG00000044609	lncRNA gene	Chr14:75430201-75442189 (+)
LP/J	ENSMUSG00230016875	lncRNA gene	Chr14:76283101-76295069 (+)
NOD/ShiLtJ	ENSMUSG00190040026	lncRNA gene	Chr14:58880046-58891804 (+)
NZO/HlLtJ	ENSMUSG00225040389	lncRNA gene	Chr14:66606892-66618647 (+)
PWK/PhJ	ENSLUMG00010038498	lncRNA gene	Chr14:58281614-58293530 (+)
SPRET/EiJ	ENSMSPG00010027479	lncRNA gene	Chr14:61845185-61856920 (+)
WSB/EiJ	ENSIUOG00005040059	lncRNA gene	Chr14:58324668-58336424 (+)

Homology

• Gene Tree
  1700031C06Rik
  

Expression

• cDNA Data
  2

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  24
• UniProt
  1

• Ensembl
  ENSMUSG00000120820 (Evidence)
• NCBI Gene
  73289

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120820	Ensembl Gene Model | MGI Sequence Detail	11755	C57BL/6J
transcript	ENSMUST00000245967	Ensembl | MGI Sequence Detail	900	Not Applicable
polypeptide	Q8BQR2	UniProt | EBI | MGI Sequence Detail	148	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700031C06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr126409	Chr14:70526979-70527034 (+)	26 bp
Tssr126410	Chr14:70527037-70527044 (+)	60 bp