1700040K01Rik Gene Detail

Summary

• Symbol
  1700040K01Rik
• Name
  RIKEN cDNA 1700040K01 gene
• Synonyms
  Gm29954

• Feature Type
  lncRNA gene
• IDs
  MGI:1920517
  NCBI Gene: 102631675
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:152810556-152812797 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  210 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920517	lncRNA gene	Chr1:152810537-152812797 (+)
129S1/SvImJ	ENSMUSG00200002809	unclassified gene	Chr1:150251971-150252408 (+)
A/J	ENSMUSG00195014204	unclassified gene	Chr1:149630531-149630968 (+)
AKR/J	ENSMUSG00220005929	unclassified gene	Chr1:149432776-149433213 (+)
BALB/cJ	ENSMUSG00180034103	unclassified gene	Chr1:149860243-149860680 (+)
C3H/HeJ	ENSMUSG00175003061	unclassified gene	Chr1:149897099-149897536 (+)
C57BL/6NJ	ENSMUSG00215003957	unclassified gene	Chr1:149795204-149795641 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000470	unclassified gene	Chr1:143683265-143683707 (+)
CAST/EiJ	ENSTCUG00005006277	unclassified gene	Chr1:148431109-148431547 (+)
CBA/J	ENSMUSG00210035138	unclassified gene	Chr1:149800974-149801411 (+)
DBA/2J	ENSMUSG00185048000	unclassified gene	Chr1:154058009-154058446 (+)
FVB/NJ	ENSMUSG00205029997	unclassified gene	Chr1:148923613-148924050 (+)
JF1/MsJ	ENSUMUG00000036430	unclassified gene	Chr1:153236346-153236783 (+)
LP/J	ENSMUSG00230017461	unclassified gene	Chr1:153628440-153628877 (+)
NOD/ShiLtJ	ENSMUSG00190012655	unclassified gene	Chr1:149614424-149614861 (+)
NZO/HlLtJ	ENSMUSG00225006285	unclassified gene	Chr1:157307470-157307907 (+)
PWK/PhJ	ENSLUMG00010031390	unclassified gene	Chr1:148584780-148585217 (+)
SPRET/EiJ	ENSMSPG00010005558	unclassified gene	Chr1:151911369-151911810 (+)
WSB/EiJ	ENSIUOG00005024738	unclassified gene	Chr1:149201901-149202338 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  11
• Chemically induced (other)
  2
• Gene trapped
  9
• Genomic Mutations
  2 involving 1700040K01Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  1

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000103840 (Evidence), ENSMUSG00000139614 (Evidence)
• NCBI Gene
  102631675

Representative Sequences			Length	Strain/Species
genomic	102631675	NCBI Gene Model | MGI Sequence Detail	2242	C57BL/6J
transcript	NR_166417	RefSeq | MGI Sequence Detail	1097	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:5589113

References

• Summaries
  All 14

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14