1700023C21Rik Gene Detail

Summary

• Symbol
  1700023C21Rik
• Name
  RIKEN cDNA 1700023C21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920507
  NCBI Gene: 73257
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:109736704-109739302 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 72.71 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  235 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920507	lncRNA gene	Chr11:109736622-109741016 (+)
129S1/SvImJ	ENSMUSG00200033895	lncRNA gene	Chr11:107071924-107074522 (+)
A/J	ENSMUSG00195022482	lncRNA gene	Chr11:106775722-106778321 (+)
AKR/J	ENSMUSG00220036268	lncRNA gene	Chr11:106955541-106958142 (+)
BALB/cJ	ENSMUSG00180020804	lncRNA gene	Chr11:107097633-107100230 (+)
C3H/HeJ	ENSMUSG00175013637	lncRNA gene	Chr11:107043446-107046044 (+)
C57BL/6NJ	ENSMUSG00215016740	lncRNA gene	Chr11:106578218-106580816 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041881	lncRNA gene	Chr11:106484217-106486854 (+)
CBA/J	ENSMUSG00210013756	lncRNA gene	Chr11:106748802-106751400 (+)
DBA/2J	ENSMUSG00185020519	lncRNA gene	Chr11:107090753-107093351 (+)
FVB/NJ	ENSMUSG00205039928	lncRNA gene	Chr11:106911838-106914436 (+)
JF1/MsJ	ENSUMUG00000029986	lncRNA gene	Chr11:107347453-107350085 (+)
LP/J	ENSMUSG00230035001	lncRNA gene	Chr11:108137456-108140055 (+)
NOD/ShiLtJ	ENSMUSG00190022828	lncRNA gene	Chr11:107094663-107097260 (+)
NZO/HlLtJ	ENSMUSG00225052544	lncRNA gene	Chr11:110190346-110192945 (+)
PWK/PhJ	ENSLUMG00010016453	lncRNA gene	Chr11:106873627-106876249 (+)
SPRET/EiJ	ENSMSPG00010037429	lncRNA gene	Chr11:107363033-107365673 (+)
WSB/EiJ	ENSIUOG00005018401	lncRNA gene	Chr11:106828256-106830856 (+)

Homology

• Gene Tree
  1700023C21Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1

• Ensembl
  ENSMUSG00000087393 (Evidence)
• NCBI Gene
  73257

Representative Sequences			Length	Strain/Species
genomic	73257	NCBI Gene Model | MGI Sequence Detail	2599	C57BL/6J
transcript	NR_045909	RefSeq | MGI Sequence Detail	389	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700023C21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105704	Chr11:109736654-109736664 (+)	-45 bp
Tssr105705	Chr11:109736690-109736696 (+)	-11 bp