3110083C13Rik Gene Detail

Summary

• Symbol
  3110083C13Rik
• Name
  RIKEN cDNA 3110083C13 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920458
  NCBI Gene: 73208
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:58236769-58241162 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 30.51 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920458	lncRNA gene	Chr14:58236747-58269641 (+)
129S1/SvImJ	ENSMUSG00200042932	lncRNA gene	Chr14:46822025-46827847 (+)
A/J	ENSMUSG00195037061	lncRNA gene	Chr14:47037307-47043130 (+)
AKR/J	ENSMUSG00220031148	lncRNA gene	Chr14:46364268-46370092 (+)
BALB/cJ	ENSMUSG00180052542	lncRNA gene	Chr14:46659330-46665153 (+)
C3H/HeJ	ENSMUSG00175051106	lncRNA gene	Chr14:48365837-48371660 (+)
C57BL/6NJ	ENSMUSG00215049897	lncRNA gene	Chr14:46559983-46565805 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005045	lincRNA gene	Chr14:49252921-49257272 (+)
CAST/EiJ	ENSTCUG00005050516	lncRNA gene	Chr14:48358602-48364425 (+)
CBA/J	ENSMUSG00210049077	lncRNA gene	Chr14:47027657-47033480 (+)
DBA/2J	ENSMUSG00185034329	lncRNA gene	Chr14:52163183-52169021 (+)
FVB/NJ	ENSMUSG00205042918	lncRNA gene	Chr14:46429700-46435524 (+)
JF1/MsJ	ENSUMUG00000046526	lncRNA gene	Chr14:63339745-63345567 (+)
LP/J	ENSMUSG00230037023	lncRNA gene	Chr14:64191009-64196833 (+)
NOD/ShiLtJ	ENSMUSG00190051517	lncRNA gene	Chr14:46793962-46799785 (+)
NZO/HlLtJ	ENSMUSG00225047229	lncRNA gene	Chr14:54484316-54490139 (+)
PWK/PhJ	ENSLUMG00010049435	lncRNA gene	Chr14:46257439-46263262 (+)
SPRET/EiJ	ENSMSPG00010047713	lncRNA gene	Chr14:49778870-49784699 (+)
WSB/EiJ	ENSIUOG00005046600	lncRNA gene	Chr14:46222238-46228059 (+)

Homology

• Gene Tree
  3110083C13Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 3110083C13Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000097303 (Evidence)
• NCBI Gene
  73208

Representative Sequences			Length	Strain/Species
genomic	73208	NCBI Gene Model | MGI Sequence Detail	4394	C57BL/6J
transcript	NR_166770	RefSeq | MGI Sequence Detail	877	C57BL/6

Molecular
Reagents

• All nucleic 6

  cDNA 6

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 3110083C13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125888	Chr14:58236762-58236795 (+)	10 bp
Tssr125889	Chr14:58236805-58236819 (+)	43 bp