3110053B16Rik Gene Detail

Summary

• Symbol
  3110053B16Rik
• Name
  RIKEN cDNA 3110053B16 gene

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1920435
  NCBI Gene: 382686
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr12:20923376-20971263 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 8.28 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1187 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920435	lncRNA gene	Chr12:20923362-20971263 (-)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195019120	pseudogene	Chr12:16168803-16201963 (+)
A/J	ENSMUSG00195019165	pseudogene	Chr12:16579002-16623890 (+)
AKR/J	ENSMUSG00220027234	pseudogene	Chr12:15694605-15697547 (+)
BALB/cJ	ENSMUSG00180009707	pseudogene	Chr12:16642586-16687475 (-)
BALB/cJ	ENSMUSG00180009738	pseudogene	Chr12:17064493-17097653 (-)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005716	pseudogene	Chr12:15669708-15719080 (+)
CBA/J	ENSMUSG00210008248	pseudogene	Chr12:17186929-17233959 (-)
CBA/J	ENSMUSG00210008238	pseudogene	Chr12:15906505-15951655 (-)
DBA/2J	ENSMUSG00185003984	pseudogene	Chr12:18191113-18360327 (-)
FVB/NJ	ENSMUSG00205001924	pseudogene	Chr12:16048607-16091141 (-)
FVB/NJ	ENSMUSG00205001917	pseudogene	Chr12:15598998-15643881 (-)
JF1/MsJ	ENSUMUG00000008214	pseudogene	Chr12:17853738-17901217 (-)
LP/J	ENSMUSG00230007341	pseudogene	Chr12:20472021-20525160 (+)
NOD/ShiLtJ	ENSMUSG00190008322	pseudogene	Chr12:605414-652486 (-)
NZO/HlLtJ	ENSMUSG00225034384	pseudogene	Chr12:22674217-22727357 (+)
PWK/PhJ	ENSLUMG00010005006	pseudogene	Chr12:15803739-15851939 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005001783	pseudogene	Chr12:15744694-15797924 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  6
• Gene trapped
  6
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  2

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  63
• RefSeq
  6
• UniProt
  1

• Ensembl
  ENSMUSG00000085642 (Evidence), ENSMUSG00000121318 (Evidence)
• NCBI Gene
  382686

Representative Sequences			Length	Strain/Species
genomic	382686	NCBI Gene Model | MGI Sequence Detail	47888	C57BL/6J
transcript	NR_184691	RefSeq | MGI Sequence Detail	1979	C57BL/6
polypeptide	Q8C3E6	UniProt | EBI | MGI Sequence Detail	192	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR043593 Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 16

  Phenotypes 5
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 3110053B16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr115851	Chr12:20971256-20971274 (-)	-2 bp
Tssr115850	Chr12:20971219-20971237 (-)	35 bp
Tssr115849	Chr12:20971046-20971084 (-)	198 bp