3110018I06Rik Gene Detail

Summary

• Symbol
  3110018I06Rik
• Name
  RIKEN cDNA 3110018I06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920410
  NCBI Gene: 73160
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:107454891-107455895 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 58.01 cM, cytoband F1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  158 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920410	lncRNA gene	Chr12:107454891-107455895 (+)
129S1/SvImJ	ENSMUSG00200026474	lncRNA gene	Chr12:99226693-99227697 (+)
A/J	ENSMUSG00195044423	lncRNA gene	Chr12:101791287-101792291 (+)
AKR/J	ENSMUSG00220039808	lncRNA gene	Chr12:99668829-99669833 (+)
BALB/cJ	ENSMUSG00180036586	lncRNA gene	Chr12:100989625-100990629 (+)
C3H/HeJ	ENSMUSG00175038378	lncRNA gene	Chr12:103608416-103609420 (+)
C57BL/6NJ	ENSMUSG00215041607	lncRNA gene	Chr12:100262727-100263731 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0018095	protein coding gene	Chr12:101953364-101954379 (+)
CAST/EiJ	ENSTCUG00005020569	lncRNA gene	Chr12:99751862-99752864 (+)
CBA/J	ENSMUSG00210014924	lncRNA gene	Chr12:100670302-100671306 (+)
DBA/2J	ENSMUSG00185030345	lncRNA gene	Chr12:102433625-102434629 (+)
FVB/NJ	ENSMUSG00205022065	lncRNA gene	Chr12:99675224-99676228 (+)
JF1/MsJ	ENSUMUG00000025406	lncRNA gene	Chr12:107211491-107212495 (+)
LP/J	ENSMUSG00230032673	lncRNA gene	Chr12:109491772-109492776 (+)
NOD/ShiLtJ	ENSMUSG00190035894	lncRNA gene	Chr12:85543996-85545000 (-)
NZO/HlLtJ	ENSMUSG00225038624	lncRNA gene	Chr12:111248400-111249404 (+)
PWK/PhJ	ENSLUMG00010013946	lncRNA gene	Chr12:100687572-100688576 (+)
SPRET/EiJ	ENSMSPG00010020651	lncRNA gene	Chr12:102980335-102981339 (+)
WSB/EiJ	ENSIUOG00005009091	lncRNA gene	Chr12:99682138-99683142 (+)

Homology

• Gene Tree
  3110018I06Rik
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• UniProt
  1

• Ensembl
  ENSMUSG00000060375 (Evidence)
• NCBI Gene
  73160

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000060375	Ensembl Gene Model | MGI Sequence Detail	1005	C57BL/6J
transcript	ENSMUST00000082269	Ensembl | MGI Sequence Detail	1005	Not Applicable
polypeptide	Q9CXS0	UniProt | EBI | MGI Sequence Detail	120	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 10
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573