2900052N01Rik Gene Detail

Summary

• Symbol
  2900052N01Rik
• Name
  RIKEN cDNA 2900052N01 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920290
  NCBI Gene: 73040
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr9:46824901-46838664 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 25.60 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  408 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920290	lncRNA gene	Chr9:46823892-46838665 (+)
129S1/SvImJ	ENSMUSG00200018786	lncRNA gene	Chr9:43916797-43930685 (+)
A/J	ENSMUSG00195023947	lncRNA gene	Chr9:43676269-43690167 (+)
AKR/J	ENSMUSG00220042533	lncRNA gene	Chr9:43761347-43775238 (+)
BALB/cJ	ENSMUSG00180032938	lncRNA gene	Chr9:43787951-43801848 (+)
C3H/HeJ	ENSMUSG00175016710	lncRNA gene	Chr9:43800031-43813923 (+)
C57BL/6NJ	ENSMUSG00215039116	lncRNA gene	Chr9:43744967-43758862 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006767	lincRNA gene	Chr9:43782391-43796172 (+)
CAST/EiJ	ENSTCUG00005016427	lncRNA gene	Chr9:43736331-43750236 (+)
CBA/J	ENSMUSG00210016876	lncRNA gene	Chr9:43835710-43849575 (+)
DBA/2J	ENSMUSG00185012470	lncRNA gene	Chr9:43914469-43928367 (+)
FVB/NJ	ENSMUSG00205044173	lncRNA gene	Chr9:44154264-44168156 (+)
JF1/MsJ	ENSUMUG00000042321	lncRNA gene	Chr9:43957773-43977878 (+)
LP/J	ENSMUSG00230042162	lncRNA gene	Chr9:44206468-44220354 (+)
NOD/ShiLtJ	ENSMUSG00190026277	lncRNA gene	Chr9:43993023-44006922 (+)
NZO/HlLtJ	ENSMUSG00225044943	lncRNA gene	Chr9:44166162-44180050 (+)
PWK/PhJ	ENSLUMG00010022294	lncRNA gene	Chr9:43913604-43927496 (+)
SPRET/EiJ	ENSMSPG00010011653	lncRNA gene	Chr9:44689701-44703586 (+)
WSB/EiJ	ENSIUOG00005022518	lncRNA gene	Chr9:43408711-43422622 (+)

Homology

• Gene Tree
  2900052N01Rik
  

Expression

• Assay Results
  597
• cDNA Data
  9

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  45
• RefSeq
  1

• Ensembl
  ENSMUSG00000099696 (Evidence)
• NCBI Gene
  73040

Representative Sequences			Length	Strain/Species
genomic	73040	NCBI Gene Model | MGI Sequence Detail	13764	C57BL/6J
transcript	NR_015605	RefSeq | MGI Sequence Detail	2585	C57BL/6

Molecular
Reagents

• All nucleic 9

  cDNA 9

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:2143242

References

• Summaries
  All 16
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 2900052N01Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr84915	Chr9:46824771-46824778 (+)	-126 bp
Tssr84916	Chr9:46824851-46824852 (+)	-49 bp
Tssr84917	Chr9:46824855-46824871 (+)	-38 bp
Tssr84918	Chr9:46824872-46824883 (+)	-23 bp
Tssr84919	Chr9:46824888-46824912 (+)	-1 bp
Tssr84920	Chr9:46824917-46824930 (+)	23 bp