2900079G21Rik Gene Detail

Summary

• Symbol
  2900079G21Rik
• Name
  RIKEN cDNA 2900079G21 gene
• Synonyms
  Gm6179

• Feature Type
  lncRNA gene
• IDs
  MGI:1920268
  NCBI Gene: 620760
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr9:112063345-112177993 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 62.55 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  3539 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920268	lncRNA gene	Chr9:112063117-112177993 (+)
129S1/SvImJ	ENSMUSG00200045620	lncRNA gene	Chr9:109156058-109265046 (+)
A/J	ENSMUSG00195045553	lncRNA gene	Chr9:108480489-108589058 (+)
AKR/J	ENSMUSG00220031939	lncRNA gene	Chr9:108788594-108897016 (+)
BALB/cJ	ENSMUSG00180036008	lncRNA gene	Chr9:108908102-109016662 (+)
C3H/HeJ	ENSMUSG00175046440	lncRNA gene	Chr9:109123823-109232388 (+)
C57BL/6NJ	ENSMUSG00215041359	lncRNA gene	Chr9:109001905-109116642 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006839	lincRNA gene	Chr9:107499289-107606619 (+)
CAST/EiJ	ENSTCUG00005036670	lncRNA gene	Chr9:108801543-108913302 (+)
CBA/J	ENSMUSG00210045305	lncRNA gene	Chr9:108835550-108943914 (+)
DBA/2J	ENSMUSG00185044566	lncRNA gene	Chr9:109171406-109279805 (+)
FVB/NJ	ENSMUSG00205050265	lncRNA gene	Chr9:109124232-109232804 (+)
JF1/MsJ	ENSUMUG00000055695	lncRNA gene	Chr9:108932567-109041294 (+)
LP/J	ENSMUSG00230050571	lncRNA gene	Chr9:109288036-109396998 (+)
NOD/ShiLtJ	ENSMUSG00190050890	lncRNA gene	Chr9:108759014-108867363 (+)
NZO/HlLtJ	ENSMUSG00225024554	lncRNA gene	Chr9:109541545-109649917 (+)
PWK/PhJ	ENSLUMG00010045758	lncRNA gene	Chr9:108950569-109059646 (+)
SPRET/EiJ	ENSMSPG00010048346	lncRNA gene	Chr9:110755902-110883820 (+)
WSB/EiJ	ENSIUOG00005048796	lncRNA gene	Chr9:108232373-108339815 (+)

Homology

• Gene Tree
  2900079G21Rik
  

Expression

• Assay Results
  597
• cDNA Data
  11

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  45
• RefSeq
  4

• Ensembl
  ENSMUSG00000087038 (Evidence)
• NCBI Gene
  620760

Representative Sequences			Length	Strain/Species
genomic	620760	NCBI Gene Model | MGI Sequence Detail	114649	C57BL/6J
transcript	NR_033432	RefSeq | MGI Sequence Detail	2961	C57BL/6

Molecular
Reagents

• All nucleic 11

  cDNA 11

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3779565

References

• Summaries
  All 11
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 2900079G21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr87517	Chr9:112063301-112063319 (+)	-35 bp
Tssr87518	Chr9:112063325-112063381 (+)	8 bp
Tssr87519	Chr9:112085360-112085409 (+)	22,040 bp
Tssr3043	Chr9:112137292-112137317 (+)	73,960 bp