2900076A07Rik Gene Detail

Summary

• Symbol
  2900076A07Rik
• Name
  RIKEN cDNA 2900076A07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920242
  NCBI Gene: 100504421
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr7:81173298-81181246 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 45.71 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  405 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920242	lncRNA gene	Chr7:81151037-81181435 (+)
129S1/SvImJ	ENSMUSG00200035158	lncRNA gene	Chr7:67992854-68000884 (+)
A/J	ENSMUSG00195041806	lncRNA gene	Chr7:72416623-72424653 (+)
AKR/J	ENSMUSG00220041235	lncRNA gene	Chr7:65951471-65959501 (+)
BALB/cJ	ENSMUSG00180013839	lncRNA gene	Chr7:69134530-69142560 (+)
C3H/HeJ	ENSMUSG00175023033	lncRNA gene	Chr7:69904950-69912980 (+)
C57BL/6NJ	ENSMUSG00215032833	lncRNA gene	Chr7:69000936-69008926 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006580	lincRNA gene	Chr7:84085679-84093975 (+)
CAST/EiJ	ENSTCUG00005046777	lncRNA gene	Chr7:72467177-72475218 (+)
CBA/J	ENSMUSG00210024038	lncRNA gene	Chr7:69756107-69764135 (+)
DBA/2J	ENSMUSG00185048061	lncRNA gene	Chr7:74078908-74086937 (+)
FVB/NJ	ENSMUSG00205026425	lncRNA gene	Chr7:69652530-69660556 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230016573	lncRNA gene	Chr7:80168172-80176200 (+)
NOD/ShiLtJ	ENSMUSG00190020571	lncRNA gene	Chr7:69895971-69903997 (+)
NZO/HlLtJ	ENSMUSG00225042649	lncRNA gene	Chr7:78414760-78422757 (+)
PWK/PhJ	ENSLUMG00010017810	lncRNA gene	Chr7:68343428-68351840 (+)
SPRET/EiJ	ENSMSPG00010023954	lncRNA gene	Chr7:68741480-68749492 (+)
WSB/EiJ	ENSIUOG00005023785	lncRNA gene	Chr7:70242257-70250283 (+)

Homology

• Gene Tree
  2900076A07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  14 phenotype references
  

• All Mutations and Alleles
  12
• Chemically induced (other)
  1
• Gene trapped
  9
• Radiation induced
  2
• Genomic Mutations
  3 involving 2900076A07Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  80
• RefSeq
  2

• Ensembl
  ENSMUSG00000097277 (Evidence)
• NCBI Gene
  100504421

Representative Sequences			Length	Strain/Species
genomic	100504421	NCBI Gene Model | MGI Sequence Detail	7949	C57BL/6J
transcript	NR_045299	RefSeq | MGI Sequence Detail	852	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 22

  Phenotypes 14
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for 2900076A07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr67507	Chr7:81173279-81173302 (+)	-7 bp
Tssr67508	Chr7:81173303-81173357 (+)	32 bp