Etaa1os Gene Detail

Summary

• Symbol
  Etaa1os
• Name
  Ewing tumor-associated antigen 1, opposite strand
• Synonyms
  2900053O20Rik, 4930542E09Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1920221
  NCBI Gene: 102633673
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:17903970-17909582 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 10.44 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  380 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920221	antisense lncRNA gene	Chr11:17903611-17955267 (+)
129S1/SvImJ	ENSMUSG00200022233	lncRNA gene	Chr11:14952799-14984180 (+)
A/J	ENSMUSG00195005382	lncRNA gene	Chr11:14759420-14790803 (+)
AKR/J	ENSMUSG00220003767	lncRNA gene	Chr11:14849974-14898801 (+)
BALB/cJ	ENSMUSG00180004047	lncRNA gene	Chr11:14764170-14795551 (+)
C3H/HeJ	ENSMUSG00175007974	lncRNA gene	Chr11:14820339-14851720 (+)
C57BL/6NJ	ENSMUSG00215003505	lncRNA gene	Chr11:14838082-14863100 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002573	antisense lncRNA gene	Chr11:13999530-14004974 (+)
CAST/EiJ	ENSTCUG00005007759	lncRNA gene	Chr11:14789627-14814470 (+)
CBA/J	ENSMUSG00210009394	lncRNA gene	Chr11:14808563-14839160 (+)
DBA/2J	ENSMUSG00185011844	lncRNA gene	Chr11:14911765-14943146 (+)
FVB/NJ	ENSMUSG00205005077	lncRNA gene	Chr11:14844867-14876248 (+)
JF1/MsJ	ENSUMUG00000005776	lncRNA gene	Chr11:15043460-15068461 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190008928	lncRNA gene	Chr11:14907774-14939155 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010012034	lncRNA gene	Chr11:14731743-14756735 (+)
SPRET/EiJ	ENSMSPG00010018443	lncRNA gene	Chr11:14978496-14991466 (+)
WSB/EiJ	ENSIUOG00005010525	lncRNA gene	Chr11:14820893-14857270 (+)

Homology

• Gene Tree
  Etaa1os
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Etaa1os
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  46
• RefSeq
  2

• Ensembl
  ENSMUSG00000086468 (Evidence)
• NCBI Gene
  102633673

Representative Sequences			Length	Strain/Species
genomic	102633673	NCBI Gene Model | MGI Sequence Detail	5613	C57BL/6J
transcript	NR_131915	RefSeq | MGI Sequence Detail	554	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

Other
Accession IDs

MGI:1925440

References

• Summaries
  All 13

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for Etaa1os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100472	Chr11:17903492-17903514 (+)	-467 bp
Tssr100473	Chr11:17903968-17903980 (+)	4 bp
Tssr100474	Chr11:17903984-17904031 (+)	38 bp