Cerox1 Gene Detail

Summary

• Symbol
  Cerox1
• Name
  cytoplasmic endogenous regulator of oxidative phosphorylation 1
• Synonyms
  2810468N07Rik, lnc6689

• Feature Type
  lncRNA gene
• IDs
  MGI:1920084
  NCBI Gene: 72834
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr17:25789785-25794017 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 12.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  29 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920084	lncRNA gene	Chr17:25789332-25794052 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015342	unclassified non-coding RNA gene	Chr17:24651223-24655449 (+)
A/J	MGP_AJ_G0015317	unclassified non-coding RNA gene	Chr17:23942243-23947095 (+)
AKR/J	MGP_AKRJ_G0015280	unclassified non-coding RNA gene	Chr17:24044904-24049130 (+)
BALB/cJ	MGP_BALBcJ_G0015280	unclassified non-coding RNA gene	Chr17:24166035-24170261 (+)
C3H/HeJ	MGP_C3HHeJ_G0015104	unclassified non-coding RNA gene	Chr17:24423831-24428049 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015734	unclassified non-coding RNA gene	Chr17:25709024-25713260 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013475	unclassified non-coding RNA gene	Chr17:21408243-21412410 (+)
CAST/EiJ	MGP_CASTEiJ_G0014655	unclassified non-coding RNA gene	Chr17:24296737-24300908 (+)
CBA/J	MGP_CBAJ_G0015083	unclassified non-coding RNA gene	Chr17:26601667-26605833 (+)
DBA/2J	MGP_DBA2J_G0015178	unclassified non-coding RNA gene	Chr17:23540930-23545189 (+)
FVB/NJ	MGP_FVBNJ_G0015185	unclassified non-coding RNA gene	Chr17:23262553-23266829 (+)
LP/J	MGP_LPJ_G0015258	unclassified non-coding RNA gene	Chr17:24943300-24947528 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015211	unclassified non-coding RNA gene	Chr17:26232607-26236843 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015774	unclassified non-coding RNA gene	Chr17:24345283-24349445 (+)
PWK/PhJ	MGP_PWKPhJ_G0014445	unclassified non-coding RNA gene	Chr17:22296715-22300931 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014232	unclassified non-coding RNA gene	Chr17:22424966-22429193 (+)
WSB/EiJ	MGP_WSBEiJ_G0014762	unclassified non-coding RNA gene	Chr17:24410916-24415146 (+)

Homology

• Human Ortholog
  CEROX1, cytoplasmic endogenous regulator of oxidative phosphorylation 1

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  CEROX1, cytoplasmic endogenous regulator of oxidative phosphorylation 1
  
• Links
  HGNC:53928

  NCBI Gene ID: 115804232

  
  
• Chr Location
  16p13.3

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• Alliance of Genome Resources
  Cerox1 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: CEROX1
• Gene Tree
  Cerox1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Radiation induced
  2
• Targeted
  1
• Genomic Mutations
  2 involving Cerox1
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  50
• RefSeq
  5

• Ensembl
  ENSMUSG00000091475 (Evidence)
• NCBI Gene
  72834

Representative Sequences			Length	Strain/Species
genomic	72834	NCBI Gene Model | MGI Sequence Detail	4233	C57BL/6J
transcript	NR_164332	RefSeq | MGI Sequence Detail	1446	C57BL/6

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 2

References

• Summaries
  All 18

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:288665 Sirey TM, et al., The long non-coding RNA Cerox1 is a post transcriptional regulator of mitochondrial complex I catalytic activity. Elife. 2019 May 2;8:e45051

TSS for Cerox1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143165	Chr17:25789796-25789822 (+)	24 bp
Tssr143166	Chr17:25789848-25789905 (+)	92 bp
Tssr143167	Chr17:25793394-25793399 (+)	3,612 bp