2810461L16Rik Gene Detail

Summary

• Symbol
  2810461L16Rik
• Name
  RIKEN cDNA 2810461L16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1920070
  NCBI Gene: 72820
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr2:180531661-180541597 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  241 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1920070	lncRNA gene	Chr2:180531661-180541597 (+)
129S1/SvImJ	ENSMUSG00200002485	lncRNA gene	Chr2:176555269-176555600 (+)
A/J	ENSMUSG00195001122	lncRNA gene	Chr2:176791992-176792323 (+)
AKR/J	ENSMUSG00220000109	lncRNA gene	Chr2:174470629-174470960 (+)
BALB/cJ	ENSMUSG00180000700	lncRNA gene	Chr2:174594472-174594803 (+)
C3H/HeJ	ENSMUSG00175004453	lncRNA gene	Chr2:175752583-175752914 (+)
C57BL/6NJ	ENSMUSG00215002616	lncRNA gene	Chr2:174694272-174694603 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000810	lncRNA gene	Chr2:174041474-174041805 (+)
CBA/J	ENSMUSG00210001481	lncRNA gene	Chr2:175073077-175073408 (+)
DBA/2J	ENSMUSG00185021291	lncRNA gene	Chr2:176312027-176312358 (+)
FVB/NJ	ENSMUSG00205002472	lncRNA gene	Chr2:175124389-175124720 (+)
JF1/MsJ	ENSUMUG00000036361	lncRNA gene	Chr2:177497582-177497913 (+)
LP/J	ENSMUSG00230027286	lncRNA gene	Chr2:178206212-178206543 (+)
NOD/ShiLtJ	ENSMUSG00190016743	lncRNA gene	Chr2:174614660-174614991 (+)
NZO/HlLtJ	ENSMUSG00225007130	lncRNA gene	Chr2:186292568-186292899 (+)
PWK/PhJ	ENSLUMG00010000393	lncRNA gene	Chr2:174923598-174923929 (+)
SPRET/EiJ	ENSMSPG00010004126	lncRNA gene	Chr2:177397835-177398166 (+)
WSB/EiJ	ENSIUOG00005000219	lncRNA gene	Chr2:174638000-174638331 (+)

Homology

• Gene Tree
  2810461L16Rik
  

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000121196 (Evidence)
• NCBI Gene
  72820

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121196	Ensembl Gene Model | MGI Sequence Detail	9937	C57BL/6J
transcript	ENSMUST00000267427	Ensembl | MGI Sequence Detail	1971	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 2810461L16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr22274	Chr2:180532468-180532479 (+)	813 bp
Tssr22275	Chr2:180532480-180532491 (+)	825 bp
Tssr22276	Chr2:180532492-180532505 (+)	838 bp
Tssr22277	Chr2:180532627-180532646 (+)	976 bp