Mir99ahg Gene Detail

Summary

• Symbol
  Mir99ahg
• Name
  Mir99a and Mirlet7c-1 host gene (non-protein coding)
• Synonyms
  2810055G20Rik, D730043B02Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1919929
  NCBI Gene: 77994
• Alliance
  genome feature page
• Transcription Start Sites
  42 TSS

Location &
Maps

• Sequence Map
  Chr16:77126216-77355316 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 44.53 cM, cytoband C3.1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  7664 from dbSNP Build 142
• Strain Annotations
  38

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919929	lncRNA gene	Chr16:76970521-77586092 (+)
129S1/SvImJ	ENSMUSG00200015630	protein coding gene	Chr16:74172939-74271326 (+)
129S1/SvImJ	ENSMUSG00200015622	protein coding gene	Chr16:74001872-74364254 (+)
129S1/SvImJ	ENSMUSG00200016038	lncRNA gene	Chr16:73909091-74446355 (+)
A/J	ENSMUSG00195023374	lncRNA gene	Chr16:73695494-74229906 (+)
A/J	ENSMUSG00195022257	protein coding gene	Chr16:73784946-74147930 (+)
A/J	ENSMUSG00195022313	protein coding gene	Chr16:73956392-74054933 (+)
AKR/J	ENSMUSG00220018235	lncRNA gene	Chr16:73876408-74413633 (+)
AKR/J	ENSMUSG00220017495	protein coding gene	Chr16:74140210-74238646 (+)
AKR/J	ENSMUSG00220017480	protein coding gene	Chr16:73969116-74336779 (+)
BALB/cJ	ENSMUSG00180002005	protein coding gene	Chr16:74031680-74130103 (+)
BALB/cJ	ENSMUSG00180002186	lncRNA gene	Chr16:73767916-74305089 (+)
C3H/HeJ	ENSMUSG00175009277	lncRNA gene	Chr16:74055528-74592710 (+)
C3H/HeJ	ENSMUSG00175008827	protein coding gene	Chr16:74319283-74417715 (+)
C57BL/6NJ	ENSMUSG00215001678	lncRNA gene	Chr16:73891799-74429002 (+)
C57BL/6NJ	ENSMUSG00215001619	protein coding gene	Chr16:73984627-74347030 (+)
C57BL/6NJ	ENSMUSG00215001624	protein coding gene	Chr16:74155569-74254005 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013458	unclassified non-coding RNA gene	Chr16:72395564-72853367 (+)
CAST/EiJ	ENSTCUG00005007812	lncRNA gene	Chr16:73705890-74244971 (+)
CBA/J	ENSMUSG00210019866	lncRNA gene	Chr16:74000595-74537776 (+)
CBA/J	ENSMUSG00210019558	protein coding gene	Chr16:74264348-74362776 (+)
CBA/J	ENSMUSG00210019550	protein coding gene	Chr16:74093407-74460925 (+)
DBA/2J	ENSMUSG00185005090	protein coding gene	Chr16:74191063-74289453 (+)
DBA/2J	ENSMUSG00185005089	protein coding gene	Chr16:74019642-74382430 (+)
DBA/2J	ENSMUSG00185005379	lncRNA gene	Chr16:73930199-74464407 (+)
FVB/NJ	ENSMUSG00205013067	protein coding gene	Chr16:73880871-74241532 (+)
FVB/NJ	ENSMUSG00205015198	lncRNA gene	Chr16:73788045-74323508 (+)
FVB/NJ	ENSMUSG00205013128	protein coding gene	Chr16:74051805-74150241 (+)
JF1/MsJ	ENSUMUG00000012658	lncRNA gene	Chr16:74075956-74619683 (+)
LP/J	ENSMUSG00230019458	lncRNA gene	Chr16:76495419-77032643 (+)
LP/J	ENSMUSG00230019091	protein coding gene	Chr16:76588047-76950556 (+)
LP/J	ENSMUSG00230019157	protein coding gene	Chr16:76759238-76857611 (+)
NOD/ShiLtJ	ENSMUSG00190010903	protein coding gene	Chr16:74019794-74381956 (+)
NOD/ShiLtJ	ENSMUSG00190011353	lncRNA gene	Chr16:73926782-74463940 (+)
NZO/HlLtJ	ENSMUSG00225029439	lncRNA gene	Chr16:79700726-80238193 (+)
PWK/PhJ	ENSLUMG00010005071	lncRNA gene	Chr16:73729261-74276035 (+)
SPRET/EiJ	ENSMSPG00010015621	lncRNA gene	Chr16:74579986-75160194 (+)
WSB/EiJ	ENSIUOG00005017675	lncRNA gene	Chr16:73905376-74462488 (+)

Homology

• Gene Tree
  Mir99ahg
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  5
• Targeted
  4
• Genomic Mutations
  4 involving Mir99ahg
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  602
• Tissues
  3
• cDNA Data
  21
• Literature Summary
  4

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  330
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000090386 (Evidence)
• NCBI Gene
  77994

Representative Sequences			Length	Strain/Species
genomic	77994	NCBI Gene Model | MGI Sequence Detail	229101	C57BL/6J
transcript	NR_015543	RefSeq | MGI Sequence Detail	3151	C57BL/6
polypeptide	Q8BGM3	UniProt | EBI | MGI Sequence Detail	121	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 22

  cDNA 21

  Other 1

  
  

  Microarray probesets 5

Other
Accession IDs

MGI:1925244

References

• Summaries
  All 35

  Developmental Gene Expression 4

  Diseases 1

  Phenotypes 13
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:361105 Tateossian H, et al., DYRK1A kinase triplication is the major cause of Otitis Media in Down Syndrome. Elife. 2025;

TSS for Mir99ahg:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139047	Chr16:77126083-77126133 (+)	-108 bp
Tssr139048	Chr16:77126134-77126241 (+)	-28 bp
Tssr139049	Chr16:77126245-77126265 (+)	39 bp
Tssr139050	Chr16:77126386-77126397 (+)	176 bp
Tssr139051	Chr16:77126399-77126413 (+)	190 bp
Tssr139052	Chr16:77126430-77126441 (+)	220 bp
Tssr139053	Chr16:77126459-77126507 (+)	267 bp
Tssr139054	Chr16:77126517-77126544 (+)	315 bp
Tssr139055	Chr16:77135186-77135202 (+)	8,978 bp
Tssr139056	Chr16:77137459-77137492 (+)	11,260 bp
Tssr139057	Chr16:77137541-77137557 (+)	11,333 bp
Tssr139058	Chr16:77148583-77148594 (+)	22,373 bp
Tssr139059	Chr16:77148638-77148640 (+)	22,423 bp
Tssr139060	Chr16:77158406-77158414 (+)	32,194 bp
Tssr139061	Chr16:77159329-77159347 (+)	33,122 bp
Tssr139062	Chr16:77165264-77165285 (+)	39,059 bp
Tssr139063	Chr16:77165764-77165790 (+)	39,561 bp
Tssr139064	Chr16:77168470-77168500 (+)	42,269 bp
Tssr139065	Chr16:77171593-77171618 (+)	45,390 bp
Tssr139066	Chr16:77172215-77172253 (+)	46,018 bp
Tssr139067	Chr16:77184803-77184820 (+)	58,596 bp
Tssr139068	Chr16:77186810-77186826 (+)	60,602 bp
Tssr139069	Chr16:77186860-77186872 (+)	60,650 bp
Tssr139074	Chr16:77218511-77218525 (+)	92,302 bp
Tssr139075	Chr16:77218535-77218546 (+)	92,325 bp
Tssr139076	Chr16:77218610-77218625 (+)	92,402 bp
Tssr139077	Chr16:77219803-77219836 (+)	93,604 bp
Tssr139078	Chr16:77229725-77229729 (+)	103,511 bp
Tssr139079	Chr16:77245366-77245393 (+)	119,164 bp
Tssr139080	Chr16:77262926-77262946 (+)	136,720 bp
Tssr139081	Chr16:77262963-77262989 (+)	136,760 bp
Tssr139083	Chr16:77280456-77280479 (+)	154,252 bp
Tssr139085	Chr16:77284695-77284703 (+)	158,483 bp
Tssr139086	Chr16:77294407-77294436 (+)	168,206 bp
Tssr139087	Chr16:77294539-77294568 (+)	168,338 bp
Tssr139088	Chr16:77296894-77296923 (+)	170,693 bp
Tssr139089	Chr16:77297056-77297087 (+)	170,856 bp
Tssr139090	Chr16:77297098-77297120 (+)	170,893 bp
Tssr139091	Chr16:77297430-77297451 (+)	171,225 bp
Tssr139092	Chr16:77298162-77298183 (+)	171,957 bp
Tssr139093	Chr16:77327629-77327660 (+)	201,429 bp
Tssr139094	Chr16:77342726-77342729 (+)	216,512 bp