2810039B14Rik Gene Detail

Summary

• Symbol
  2810039B14Rik
• Name
  RIKEN cDNA 2810039B14 gene

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:1919915
  NCBI Gene: 72665
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr15:75515335-75518816 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 34.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  202 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919915	lncRNA gene	Chr15:75513232-75519286 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039864	pseudogene	Chr15:75664848-75677262 (+)
A/J	MGP_AJ_G0039870	pseudogene	Chr15:72923435-72934963 (+)
AKR/J	MGP_AKRJ_G0039794	pseudogene	Chr15:74882419-74895303 (+)
BALB/cJ	MGP_BALBcJ_G0039847	pseudogene	Chr15:72936057-72947649 (+)
C3H/HeJ	MGP_C3HHeJ_G0039493	pseudogene	Chr15:74948744-74960324 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040413	pseudogene	Chr15:78501958-78513478 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037009	pseudogene	Chr15:69597342-69609464 (+)
CAST/EiJ	MGP_CASTEiJ_G0038599	pseudogene	Chr15:75723009-75739082 (+)
CBA/J	MGP_CBAJ_G0039461	pseudogene	Chr15:81017350-81041942 (+)
DBA/2J	MGP_DBA2J_G0039665	pseudogene	Chr15:72436897-72448995 (+)
FVB/NJ	MGP_FVBNJ_G0039623	pseudogene	Chr15:71493941-71505783 (+)
LP/J	MGP_LPJ_G0039703	pseudogene	Chr15:75759017-75770529 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039620	pseudogene	Chr15:86303127-86314970 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040513	pseudogene	Chr15:75134283-75145800 (+)
PWK/PhJ	MGP_PWKPhJ_G0038272	pseudogene	Chr15:72574245-72586995 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038016	pseudogene	Chr15:74869383-74881137 (+)
WSB/EiJ	MGP_WSBEiJ_G0038830	pseudogene	Chr15:75220706-75233597 (+)

Homology

• Gene Tree
  2810039B14Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  15 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving 2810039B14Rik
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  10

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2

• Ensembl
  ENSMUSG00000099034 (Evidence)
• NCBI Gene
  72665

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099034	Ensembl Gene Model | MGI Sequence Detail	3482	C57BL/6J
transcript	ENSMUST00000185040	Ensembl | MGI Sequence Detail	1113	Not Applicable
polypeptide	XP_054875619	RefSeq | MGI Sequence Detail	403	C57BL/6J

Molecular
Reagents

• All nucleic 10

  cDNA 10

  
  

  Microarray probesets 2

References

• Summaries
  All 28

  Phenotypes 15
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for 2810039B14Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131674	Chr15:75513725-75513746 (+)	-1,599 bp
Tssr131675	Chr15:75514301-75514345 (+)	-1,012 bp
Tssr131676	Chr15:75514383-75514394 (+)	-946 bp