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Snhg5 Gene Detail
Summary
  • Symbol
    Snhg5
  • Name
    small nucleolar RNA host gene 5
  • Synonyms
    2810026P18Rik, mU50HG-b
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1919905
    NCBI Gene: 72655
  • Alliance
    genome feature page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:88403105-88404950 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 47.24 cM, cytoband E3.2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    160 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919905
 lncRNA gene Chr9:88377321-88405615 (-)
129S1/SvImJ ENSMUSG00200006029
 lncRNA gene Chr9:85481155-85509512 (-)
A/J ENSMUSG00195007529
 lncRNA gene Chr9:85243827-85272185 (-)
AKR/J ENSMUSG00220020847
 lncRNA gene Chr9:85397407-85424191 (-)
BALB/cJ ENSMUSG00180007546
 lncRNA gene Chr9:85348657-85377018 (-)
C3H/HeJ ENSMUSG00175004932
 lncRNA gene Chr9:85408207-85436570 (-)
C57BL/6NJ ENSMUSG00215012018
 lncRNA gene Chr9:85384856-85413147 (-)
CAROLI/EiJ no annotation
CAST/EiJ ENSTCUG00005004394
 lncRNA gene Chr9:84901640-84928017 (-)
CBA/J ENSMUSG00210006150
 lncRNA gene Chr9:85507074-85533928 (-)
DBA/2J ENSMUSG00185002125
 lncRNA gene Chr9:85451287-85478133 (-)
FVB/NJ ENSMUSG00205004903
 lncRNA gene Chr9:85643526-85670246 (-)
JF1/MsJ ENSUMUG00000030662
 lncRNA gene Chr9:85345355-85370875 (-)
LP/J ENSMUSG00230010130
 lncRNA gene Chr9:85609403-85637732 (-)
NOD/ShiLtJ ENSMUSG00190011663
 lncRNA gene Chr9:85576359-85603138 (-)
NZO/HlLtJ ENSMUSG00225016511
 lncRNA gene Chr9:85752223-85779081 (-)
PWK/PhJ ENSLUMG00010003022
 lncRNA gene Chr9:85249905-85276419 (-)
SPRET/EiJ ENSMSPG00010002802
 lncRNA gene Chr9:86782265-86809623 (-)
WSB/EiJ ENSIUOG00005003641
 lncRNA gene Chr9:84918164-84944887 (-)



Homology
more
  • Human Ortholog
    SNHG5, small nucleolar RNA host gene 5
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SNHG5, small nucleolar RNA host gene 5
  • Synonyms
    C6orf160, LINC00044, NCRNA00044, U50HG
  • Links
    NCBI Gene ID: 387066

  • Chr Location
    6q14.3; chr6:85644369-85678943 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    2 phenotypes from multigenic genotypes
    8 phenotype references
  • All Mutations and Alleles
    54
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    1
  • Gene trapped
    52
  • Genomic Mutations
    1 involving Snhg5
  • Find Mice (IMSR)
    35 strains or lines available
Homozygous knock-out mice live a normal lifespan and exhibit normal kidneys.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    639
  • Tissues
    19
  • cDNA Data
    52
  • Literature Summary
    2
Sequences &
Gene Models
less
  • All Sequences
    69
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 72655 NCBI Gene Model | MGI Sequence Detail 1846 C57BL/6J ±  kb
transcript NR_040721 RefSeq | MGI Sequence Detail 1084 C57BL/6  
polypeptide Q78H50 UniProt | EBI | MGI Sequence Detail 37 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 56
    cDNA 53
    Primer pair 2
    Other 1

    Microarray probesets 3
References
more
  • Summaries
    All 26
    Developmental Gene Expression 2
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:379194 D'Amico S, et al., Loss of Snhg5 disrupts cell-cycle regulation without altering cystogenesis in a mouse model of polycystic kidney disease. Sci Rep. 2026 Jan 8;16(1):4869
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory