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Ccdc12 Gene Detail
Summary
  • Symbol
    Ccdc12
  • Name
    coiled-coil domain containing 12
  • Synonyms
    2700094L05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919904
    NCBI Gene: 72654
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:110485571-110540674 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 60.37 cM, cytoband F2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    351 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919904
 protein coding gene Chr9:110483376-110540674 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035353
 protein coding gene Chr9:112822303-112883616 (+)
A/J MGP_AJ_G0035334
 protein coding gene Chr9:108716916-108772366 (+)
AKR/J MGP_AKRJ_G0035265
 protein coding gene Chr9:111414684-111474823 (+)
BALB/cJ MGP_BALBcJ_G0035329
 protein coding gene Chr9:108465959-108521003 (+)
C3H/HeJ MGP_C3HHeJ_G0035037
 protein coding gene Chr9:111924797-111979959 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035851
 protein coding gene Chr9:115886476-115952171 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032737
 protein coding gene Chr9:105936239-105990067 (+)
CAST/EiJ MGP_CASTEiJ_G0034343
 protein coding gene Chr9:111718736-111775740 (+)
CBA/J MGP_CBAJ_G0035004
 protein coding gene Chr9:120196143-120263541 (+)
DBA/2J MGP_DBA2J_G0035163
 protein coding gene Chr9:108178091-108235766 (+)
FVB/NJ MGP_FVBNJ_G0035110
 protein coding gene Chr9:107007269-107063307 (+)
LP/J MGP_LPJ_G0035242
 protein coding gene Chr9:113115104-113173094 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035150
 protein coding gene Chr9:121537688-121599032 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035871
 protein coding gene Chr9:111755751-111817334 (+)
PWK/PhJ MGP_PWKPhJ_G0034050
 protein coding gene Chr9:108422658-108480905 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033885
 protein coding gene Chr9:111837320-111896652 (+)
WSB/EiJ MGP_WSBEiJ_G0034464
 protein coding gene Chr9:111622352-111682848 (+)



Homology
more
  • Human Ortholog
    CCDC12, coiled-coil domain containing 12
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCDC12, coiled-coil domain containing 12
  • Links
    NCBI Gene ID: 151903
    neXtProt AC: NX_Q8WUD4
    UniProt: Q8WUD4

  • Chr Location
    3p21.31; chr3:46921726-46982010 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    61
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000019659 Ensembl Gene Model | MGI Sequence Detail 55104 C57BL/6J ±  kb
transcript ENSMUST00000019803 Ensembl | MGI Sequence Detail 834 Not Applicable  
polypeptide ENSMUSP00000019803 Ensembl | MGI Sequence Detail 166 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 61
    cDNA 61

    Microarray probesets 7
Other
Accession IDs
less
MGI:2143378
References
more
  • Summaries
    All 32
    Gene Ontology 1
    Phenotypes 10
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory