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Smim18 Gene Detail
Summary
  • Symbol
    Smim18
  • Name
    small integral membrane protein 18
  • Synonyms
    2700090O03Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919882
    NCBI Gene: 72632
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:34232140-34237766 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 20.80 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    56 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919882
 protein coding gene Chr8:34232140-34237798 (-)
129S1/SvImJ MGP_129S1SvImJ_G0033528
 protein coding gene Chr8:32204467-32209947 (-)
A/J MGP_AJ_G0033508
 protein coding gene Chr8:30971585-30977223 (-)
AKR/J MGP_AKRJ_G0033432
 protein coding gene Chr8:31939611-31946831 (-)
BALB/cJ MGP_BALBcJ_G0033504
 protein coding gene Chr8:31092915-31098583 (-)
C3H/HeJ MGP_C3HHeJ_G0033216
 protein coding gene Chr8:32264095-32271247 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034020
 protein coding gene Chr8:33442886-33448544 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0030969
 protein coding gene Chr8:27975411-27981877 (-)
CAST/EiJ MGP_CASTEiJ_G0032543
 protein coding gene Chr8:31703078-31708756 (-)
CBA/J MGP_CBAJ_G0033194
 protein coding gene Chr8:34753569-34759218 (-)
DBA/2J MGP_DBA2J_G0033347
 protein coding gene Chr8:30949866-30955354 (-)
FVB/NJ MGP_FVBNJ_G0033292
 protein coding gene Chr8:30613662-30619231 (-)
LP/J MGP_LPJ_G0033437
 protein coding gene Chr8:32169236-32174898 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0033334
 protein coding gene Chr8:34282838-34289965 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034039
 protein coding gene Chr8:32029535-32035193 (-)
PWK/PhJ MGP_PWKPhJ_G0032255
 protein coding gene Chr8:30466248-30472028 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032086
 protein coding gene Chr8:31295202-31300943 (-)
WSB/EiJ MGP_WSBEiJ_G0032659
 protein coding gene Chr8:32162535-32169765 (-)



Homology
more
  • Human Ortholog
    SMIM18, small integral membrane protein 18
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SMIM18, small integral membrane protein 18
  • Links
    NCBI Gene ID: 100507341
    neXtProt AC: NX_P0DKX4
    UniProt: P0DKX4

  • Chr Location
    chr8:30638580-30646064 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 72632 NCBI Gene Model | MGI Sequence Detail 5627 C57BL/6J ±  kb
transcript NM_001206849 RefSeq | MGI Sequence Detail 555 C57BL/6  
polypeptide NP_001193778 RefSeq | MGI Sequence Detail 93 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR031671 Small integral membrane protein 5/18/22
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
Other
Accession IDs
less
MGI:2142621
References
more
  • Summaries
    All 14
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory