2700016F22Rik Gene Detail

Summary

• Symbol
  2700016F22Rik
• Name
  RIKEN cDNA 2700016F22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1919807
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:139106978-139107727 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 70.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919807	lncRNA gene	Chr4:139106978-139107727 (-)
129S1/SvImJ	ENSMUSG00200046365	lncRNA gene	Chr4:132521063-132521775 (-)
A/J	ENSMUSG00195035447	lncRNA gene	Chr4:133864644-133865356 (-)
AKR/J	ENSMUSG00220048151	lncRNA gene	Chr4:132860254-132860966 (-)
BALB/cJ	ENSMUSG00180047296	lncRNA gene	Chr4:131500206-131500918 (-)
C3H/HeJ	ENSMUSG00175042126	lncRNA gene	Chr4:132528297-132529009 (-)
C57BL/6NJ	ENSMUSG00215050500	lncRNA gene	Chr4:134050106-134050818 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013663	lncRNA gene	Chr4:133490284-133491001 (-)
CBA/J	ENSMUSG00210030044	lncRNA gene	Chr4:132152333-132153045 (-)
DBA/2J	ENSMUSG00185052334	lncRNA gene	Chr4:133666038-133666750 (-)
FVB/NJ	ENSMUSG00205048350	lncRNA gene	Chr4:131920950-131921662 (-)
JF1/MsJ	ENSUMUG00000047818	lncRNA gene	Chr4:134362779-134363491 (-)
LP/J	ENSMUSG00230040752	lncRNA gene	Chr4:137459740-137460452 (-)
NOD/ShiLtJ	ENSMUSG00190033451	lncRNA gene	Chr4:131923475-131924187 (-)
NZO/HlLtJ	ENSMUSG00225010521	lncRNA gene	Chr4:143414365-143415077 (-)
PWK/PhJ	ENSLUMG00010046217	lncRNA gene	Chr4:131348375-131349087 (-)
SPRET/EiJ	ENSMSPG00010036976	lncRNA gene	Chr4:133407561-133408273 (-)
WSB/EiJ	ENSIUOG00005046703	lncRNA gene	Chr4:131809025-131809737 (-)

Homology

• Gene Tree
  2700016F22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Targeted
  1
• Genomic Mutations
  3 involving 2700016F22Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• cDNA Data
  3

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000120907 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120907	Ensembl Gene Model | MGI Sequence Detail	750	C57BL/6J
transcript	ENSMUST00000246422	Ensembl | MGI Sequence Detail	750	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8

TSS for 2700016F22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr44230	Chr4:139107685-139107715 (-)	27 bp