2610206C17Rik Gene Detail

Summary

• Symbol
  2610206C17Rik
• Name
  RIKEN cDNA 2610206C17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1919745
  NCBI Gene: 72495
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:84338848-84425757 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 48.36 cM, cytoband D3
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  2335 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919745	lncRNA gene	Chr7:84338848-84447533 (+)
129S1/SvImJ	ENSMUSG00200027998	lncRNA gene	Chr7:71168910-71248698 (+)
A/J	ENSMUSG00195042649	lncRNA gene	Chr7:75620493-75709009 (+)
AKR/J	ENSMUSG00220039281	lncRNA gene	Chr7:69155064-69243573 (+)
BALB/cJ	ENSMUSG00180039732	lncRNA gene	Chr7:72326067-72414572 (+)
C3H/HeJ	ENSMUSG00175036702	lncRNA gene	Chr7:73062351-73142146 (+)
C57BL/6NJ	ENSMUSG00215032931	lncRNA gene	Chr7:72170925-72263731 (+)
C57BL/6NJ	ENSMUSG00215022290	protein coding gene	Chr7:72170944-72261717 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013803	unclassified non-coding RNA gene	Chr7:87111563-87189491 (+)
CAST/EiJ	ENSTCUG00005046704	lncRNA gene	Chr7:75627268-75711394 (+)
CBA/J	ENSMUSG00210042490	lncRNA gene	Chr7:72924629-73004414 (+)
DBA/2J	ENSMUSG00185048512	lncRNA gene	Chr7:77235989-77315777 (+)
FVB/NJ	ENSMUSG00205039744	lncRNA gene	Chr7:72876979-72965481 (+)
JF1/MsJ	ENSUMUG00000020302	lncRNA gene	Chr7:81939041-82023121 (+)
LP/J	ENSMUSG00230017630	lncRNA gene	Chr7:83325325-83405101 (+)
NOD/ShiLtJ	ENSMUSG00190028776	lncRNA gene	Chr7:73083046-73175047 (+)
NZO/HlLtJ	ENSMUSG00225011525	lncRNA gene	Chr7:81600206-81679979 (+)
PWK/PhJ	ENSLUMG00010039525	lncRNA gene	Chr7:71526111-71613687 (+)
SPRET/EiJ	ENSMSPG00010013563	lncRNA gene	Chr7:71953217-72024405 (+)
WSB/EiJ	ENSIUOG00005035566	lncRNA gene	Chr7:73413264-73511267 (+)

Homology

• Gene Tree
  2610206C17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  18 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving 2610206C17Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000085236 (Evidence)
• NCBI Gene
  72495

Representative Sequences			Length	Strain/Species
genomic	72495	NCBI Gene Model | MGI Sequence Detail	86910	C57BL/6J
transcript	NR_038175	RefSeq | MGI Sequence Detail	1717	C57BL/6
polypeptide	Q9D018	UniProt | EBI | MGI Sequence Detail	105	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 3

References

• Summaries
  All 33

  Phenotypes 18
• Earliest
  J:141526 Russell LB, et al., Analysis of the albino-locus region of the mouse. III. Time of death of prenatal lethals. Genetics. 1979 May;92(1):205-13
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 2610206C17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr67599	Chr7:84399265-84399274 (+)	60,422 bp