2210409E12Rik Pseudogene Detail

Summary

• Symbol
  2210409E12Rik
• Name
  RIKEN cDNA 2210409E12 gene

• Feature Type
  pseudogene
• IDs
  MGI:1919631
  NCBI Gene: 72381
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:88863483-88863828 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 54.34 cM, cytoband C
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  47 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919631	pseudogene	Chr11:88863464-88863840 (+)
129S1/SvImJ	ENSMUSG00200020356	pseudogene	Chr11:86002693-86003038 (+)
A/J	ENSMUSG00195009481	pseudogene	Chr11:85857710-85858055 (+)
AKR/J	ENSMUSG00220012197	pseudogene	Chr11:86057422-86057767 (+)
BALB/cJ	ENSMUSG00180011791	pseudogene	Chr11:86057267-86057612 (+)
C3H/HeJ	ENSMUSG00175033079	pseudogene	Chr11:86004143-86004488 (+)
C57BL/6NJ	ENSMUSG00215029433	pseudogene	Chr11:85671174-85671519 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017261	pseudogene	Chr11:85576730-85577075 (+)
CBA/J	ENSMUSG00210039736	pseudogene	Chr11:85821710-85822055 (+)
DBA/2J	ENSMUSG00185020355	pseudogene	Chr11:86137860-86138205 (+)
FVB/NJ	ENSMUSG00205024409	pseudogene	Chr11:86017470-86017815 (+)
JF1/MsJ	ENSUMUG00000029897	pseudogene	Chr11:86465416-86465761 (+)
LP/J	ENSMUSG00230030751	pseudogene	Chr11:87171591-87171936 (+)
NOD/ShiLtJ	ENSMUSG00190020503	pseudogene	Chr11:86169717-86170062 (+)
NZO/HlLtJ	ENSMUSG00225040323	pseudogene	Chr11:89279192-89279537 (+)
PWK/PhJ	ENSLUMG00010035678	pseudogene	Chr11:86004788-86005133 (+)
SPRET/EiJ	ENSMSPG00010028312	pseudogene	Chr11:86413802-86414147 (+)
SPRET/EiJ	ENSMSPG00010039074	pseudogene	Chr5:60762495-60762840 (+)
WSB/EiJ	ENSIUOG00005008259	pseudogene	Chr11:85976793-85977138 (+)

Homology

• Gene Tree
  2210409E12Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving 2210409E12Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  7

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000081766 (Evidence)
• NCBI Gene
  72381

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081766	Ensembl Gene Model | MGI Sequence Detail	346	C57BL/6J
transcript	ENSMUST00000122062	Ensembl | MGI Sequence Detail	346	Not Applicable
polypeptide	Q9D7T5	UniProt | EBI | MGI Sequence Detail	100	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR039049 Elongin B
  IPR000626 Ubiquitin-like domain
  IPR029071 Ubiquitin-like domain superfamily

Molecular
Reagents

• All nucleic 7

  cDNA 7

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:2144408, MGI:2144623, MGI:3709772

References

• Summaries
  All 20

  Diseases 1

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:109163 Yu YE, et al., A deficiency in the region homologous to human 17q21.33-q23.2 causes heart defects in mice. Genetics. 2006 May;173(1):297-307