1810073O08Rik Gene Detail

Summary

• Symbol
  1810073O08Rik
• Name
  RIKEN cDNA 1810073O08 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1919535
  NCBI Gene: 72285
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:84225363-84229038 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  206 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919535	lncRNA gene	Chr17:84213283-84229038 (+)
129S1/SvImJ	ENSMUSG00200024893	lncRNA gene	Chr17:79617224-79620909 (+)
A/J	ENSMUSG00195029846	lncRNA gene	Chr17:80990651-80994332 (+)
AKR/J	ENSMUSG00220013738	lncRNA gene	Chr17:79948153-79951834 (+)
BALB/cJ	ENSMUSG00180028065	lncRNA gene	Chr17:80670041-80673710 (+)
C3H/HeJ	ENSMUSG00175016451	lncRNA gene	Chr17:79929086-79932767 (+)
C57BL/6NJ	ENSMUSG00215016548	lncRNA gene	Chr17:79663531-79667202 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015459	lncRNA gene	Chr17:80476802-80480465 (+)
CBA/J	ENSMUSG00210020882	lncRNA gene	Chr17:79787820-79791499 (+)
DBA/2J	ENSMUSG00185020866	lncRNA gene	Chr17:82615671-82619361 (+)
FVB/NJ	ENSMUSG00205032744	lncRNA gene	Chr17:80433378-80437049 (+)
JF1/MsJ	ENSUMUG00000015320	lncRNA gene	Chr17:82347847-82351550 (+)
LP/J	ENSMUSG00230010231	lncRNA gene	Chr17:83635725-83639406 (+)
NOD/ShiLtJ	ENSMUSG00190010406	lncRNA gene	Chr17:79701006-79704685 (+)
NZO/HlLtJ	ENSMUSG00225031466	lncRNA gene	Chr17:85896759-85900434 (+)
PWK/PhJ	ENSLUMG00010005748	lncRNA gene	Chr17:79550791-79554463 (+)
SPRET/EiJ	ENSMSPG00010008693	lncRNA gene	Chr17:80110274-80113958 (+)
WSB/EiJ	ENSIUOG00005010787	lncRNA gene	Chr17:80616795-80620478 (+)

Homology

• Gene Tree
  1810073O08Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000117442 (Evidence)
• NCBI Gene
  72285

Representative Sequences			Length	Strain/Species
genomic	72285	NCBI Gene Model | MGI Sequence Detail	3676	C57BL/6J
transcript	NR_166916	RefSeq | MGI Sequence Detail	1859	ZRU/MplStud

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 9

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1810073O08Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146016	Chr17:84225360-84225378 (+)	6 bp