1700030M09Rik Gene Detail

Summary

• Symbol
  1700030M09Rik
• Name
  RIKEN cDNA 1700030M09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1919509
  NCBI Gene: 72259
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:122271127-122274391 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  252 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919509	lncRNA gene	Chr8:122271119-122275094 (+)
129S1/SvImJ	ENSMUSG00200043656	lncRNA gene	Chr8:116607201-116611162 (+)
A/J	ENSMUSG00195027194	lncRNA gene	Chr8:116898781-116902739 (+)
AKR/J	ENSMUSG00220043450	lncRNA gene	Chr8:117089009-117092968 (+)
BALB/cJ	ENSMUSG00180028362	lncRNA gene	Chr8:116944529-116948488 (+)
C3H/HeJ	ENSMUSG00175033454	lncRNA gene	Chr8:117000808-117004767 (+)
C57BL/6NJ	ENSMUSG00215036252	lncRNA gene	Chr8:116575047-116579006 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006733	lincRNA gene	Chr8:112702832-112707594 (+)
CAST/EiJ	ENSTCUG00005036816	lncRNA gene	Chr8:116334577-116338973 (+)
CBA/J	ENSMUSG00210039126	lncRNA gene	Chr8:116928439-116932401 (+)
DBA/2J	ENSMUSG00185036915	lncRNA gene	Chr8:123032501-123036462 (+)
FVB/NJ	ENSMUSG00205039840	lncRNA gene	Chr8:115901856-115905819 (+)
JF1/MsJ	ENSUMUG00000036207	lncRNA gene	Chr8:125335075-125341012 (+)
LP/J	ENSMUSG00230031825	lncRNA gene	Chr8:126660389-126664349 (+)
NOD/ShiLtJ	ENSMUSG00190021832	lncRNA gene	Chr8:117036228-117040191 (+)
NZO/HlLtJ	ENSMUSG00225044127	lncRNA gene	Chr8:130032964-130036925 (+)
PWK/PhJ	ENSLUMG00010041171	lncRNA gene	Chr8:116743869-116748343 (+)
SPRET/EiJ	ENSMSPG00010041135	lncRNA gene	Chr8:118943207-118947275 (+)
WSB/EiJ	ENSIUOG00005030889	lncRNA gene	Chr8:117737814-117741774 (+)

Homology

• Gene Tree
  1700030M09Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000097424 (Evidence)
• NCBI Gene
  72259

Representative Sequences			Length	Strain/Species
genomic	72259	NCBI Gene Model | MGI Sequence Detail	3265	C57BL/6J
transcript	NR_045903	RefSeq | MGI Sequence Detail	964	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700030M09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr79811	Chr8:122271117-122271126 (+)	-5 bp
Tssr79812	Chr8:122271133-122271164 (+)	22 bp