1700006H21Rik Gene Detail

Summary

• Symbol
  1700006H21Rik
• Name
  RIKEN cDNA 1700006H21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1919507
  NCBI Gene: 72257
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr13:107823932-107828703 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  319 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919507	lncRNA gene	Chr13:107812902-107832758 (+)
129S1/SvImJ	ENSMUSG00200032426	lncRNA gene	Chr13:102265030-102269804 (+)
A/J	ENSMUSG00195013979	lncRNA gene	Chr13:102823311-102828097 (+)
AKR/J	ENSMUSG00220031180	lncRNA gene	Chr13:101252728-101257502 (+)
BALB/cJ	ENSMUSG00180031131	lncRNA gene	Chr13:103398519-103403306 (+)
C3H/HeJ	ENSMUSG00175027518	lncRNA gene	Chr13:103492616-103497403 (+)
C57BL/6NJ	ENSMUSG00215028971	lncRNA gene	Chr13:103472908-103477684 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005003	lincRNA gene	Chr13:101064074-101068872 (+)
CAST/EiJ	ENSTCUG00005026721	lncRNA gene	Chr13:102581965-102586779 (+)
CBA/J	ENSMUSG00210010801	lncRNA gene	Chr13:102818269-102823056 (+)
DBA/2J	ENSMUSG00185027255	lncRNA gene	Chr13:106580252-106585039 (+)
FVB/NJ	ENSMUSG00205007604	lncRNA gene	Chr13:102246869-102251656 (+)
JF1/MsJ	ENSUMUG00000014064	lncRNA gene	Chr13:106094194-106099022 (+)
LP/J	ENSMUSG00230007736	lncRNA gene	Chr13:116733163-116737937 (+)
NOD/ShiLtJ	ENSMUSG00190019458	lncRNA gene	Chr13:103139223-103143997 (+)
NZO/HlLtJ	ENSMUSG00225037402	lncRNA gene	Chr13:109008712-109013486 (+)
PWK/PhJ	ENSLUMG00010010540	lncRNA gene	Chr13:102131591-102136410 (+)
SPRET/EiJ	ENSMSPG00010018088	lncRNA gene	Chr13:103753918-103758793 (+)
WSB/EiJ	ENSIUOG00005009810	lncRNA gene	Chr13:102280229-102285005 (+)

Homology

• Gene Tree
  1700006H21Rik
  

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  1

• Ensembl
  ENSMUSG00000102000 (Evidence)
• NCBI Gene
  72257

Representative Sequences			Length	Strain/Species
genomic	72257	NCBI Gene Model | MGI Sequence Detail	4772	C57BL/6J
transcript	NR_045900	RefSeq | MGI Sequence Detail	622	ZRU/MplStud

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700006H21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120956	Chr13:107823923-107823937 (+)	-2 bp
Tssr120957	Chr13:107823940-107823947 (+)	12 bp