1700030C12Rik Gene Detail

Summary

• Symbol
  1700030C12Rik
• Name
  RIKEN cDNA 1700030C12 gene
• Synonyms
  ENSMUSG00000073112

• Feature Type
  lncRNA gene
• IDs
  MGI:1919496
  NCBI Gene: 72246
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr11:23447761-23449663 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 14.32 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  25

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919496	lncRNA gene	Chr11:23446606-23449843 (+)
129S1/SvImJ	ENSMUSG00200022485	lncRNA gene	Chr11:20465768-20467676 (+)
A/J	ENSMUSG00195004879	protein coding gene	Chr11:20312593-20316306 (+)
A/J	ENSMUSG00195005326	lncRNA gene	Chr11:20312826-20314735 (+)
AKR/J	ENSMUSG00220003664	lncRNA gene	Chr11:20402121-20404029 (+)
BALB/cJ	ENSMUSG00180004163	lncRNA gene	Chr11:20306616-20308525 (+)
BALB/cJ	ENSMUSG00180003846	protein coding gene	Chr11:20306383-20310097 (+)
C3H/HeJ	ENSMUSG00175008309	lncRNA gene	Chr11:20321306-20323215 (+)
C3H/HeJ	ENSMUSG00175007613	protein coding gene	Chr11:20321073-20324787 (+)
C57BL/6NJ	ENSMUSG00215003374	lncRNA gene	Chr11:20392009-20393917 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013299	unclassified non-coding RNA gene	Chr11:19323477-19325565 (+)
CAST/EiJ	ENSTCUG00005007449	lncRNA gene	Chr11:20269790-20271705 (+)
CBA/J	ENSMUSG00210009625	lncRNA gene	Chr11:20310562-20312470 (+)
DBA/2J	ENSMUSG00185011888	lncRNA gene	Chr11:20412803-20414713 (+)
FVB/NJ	ENSMUSG00205005185	lncRNA gene	Chr11:20366430-20368338 (+)
JF1/MsJ	ENSUMUG00000011168	lncRNA gene	Chr11:20643739-20645647 (+)
LP/J	ENSMUSG00230015054	protein coding gene	Chr11:21456357-21460071 (+)
LP/J	ENSMUSG00230016158	lncRNA gene	Chr11:21456590-21458499 (+)
NOD/ShiLtJ	ENSMUSG00190008475	protein coding gene	Chr11:20472574-20476288 (+)
NOD/ShiLtJ	ENSMUSG00190008899	lncRNA gene	Chr11:20472807-20474716 (+)
NZO/HlLtJ	ENSMUSG00225022601	lncRNA gene	Chr11:23497286-23499195 (+)
NZO/HlLtJ	ENSMUSG00225020812	protein coding gene	Chr11:23497053-23500767 (+)
PWK/PhJ	ENSLUMG00010012282	lncRNA gene	Chr11:20317263-20319171 (+)
SPRET/EiJ	ENSMSPG00010019406	lncRNA gene	Chr11:20543006-20544922 (+)
WSB/EiJ	ENSIUOG00005010180	lncRNA gene	Chr11:20377030-20378939 (+)

Homology

• Gene Tree
  1700030C12Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving 1700030C12Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  44
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000086459 (Evidence)
• NCBI Gene
  72246

Representative Sequences			Length	Strain/Species
genomic	72246	NCBI Gene Model | MGI Sequence Detail	1903	C57BL/6J
transcript	NR_166705	RefSeq | MGI Sequence Detail	1353	C57BL/6
polypeptide	Q3V134	UniProt | EBI | MGI Sequence Detail	127	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3708546

References

• Summaries
  All 15

  Phenotypes 4
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700030C12Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100626	Chr11:23447735-23447740 (+)	-23 bp
Tssr100627	Chr11:23447745-23447789 (+)	6 bp
Tssr100628	Chr11:23447796-23447807 (+)	41 bp
Tssr100629	Chr11:23447810-23447832 (+)	60 bp
Tssr100630	Chr11:23447839-23447850 (+)	84 bp