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Lncbate3 Gene Detail
Summary
  • Symbol
    Lncbate3
  • Name
    brown adipose tissue enriched long noncoding RNA 3
  • Synonyms
    1700003G13Rik
Location &
Maps
more
  • Sequence Map
    Chr9:45229564-45233377 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 24.84 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    249 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919479
 lncRNA gene Chr9:45229556-45233429 (-)
129S1/SvImJ ENSMUSG00200018536
 lncRNA gene Chr9:42307595-42311393 (-)
A/J ENSMUSG00195024307
 lncRNA gene Chr9:42075039-42078844 (-)
AKR/J ENSMUSG00220042244
 lncRNA gene Chr9:42152659-42156462 (-)
BALB/cJ ENSMUSG00180033289
 lncRNA gene Chr9:42186721-42190526 (-)
C3H/HeJ ENSMUSG00175015566
 lncRNA gene Chr9:42198632-42202437 (-)
C57BL/6NJ ENSMUSG00215038782
 lncRNA gene Chr9:42150142-42153956 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0004188
 antisense lncRNA gene Chr9:42196919-42200726 (-)
CAST/EiJ ENSTCUG00005015893
 lncRNA gene Chr9:42135648-42139441 (-)
CBA/J ENSMUSG00210017117
 lncRNA gene Chr9:42235260-42239065 (-)
DBA/2J ENSMUSG00185012035
 lncRNA gene Chr9:42313319-42317124 (-)
FVB/NJ ENSMUSG00205041160
 lncRNA gene Chr9:42552578-42556383 (-)
JF1/MsJ ENSUMUG00000040590
 lncRNA gene Chr9:42347510-42351308 (-)
LP/J ENSMUSG00230042384
 lncRNA gene Chr9:42597977-42601775 (-)
NOD/ShiLtJ ENSMUSG00190024221
 lncRNA gene Chr9:42392032-42395837 (-)
NZO/HlLtJ ENSMUSG00225044755
 lncRNA gene Chr9:42566099-42569902 (-)
PWK/PhJ ENSLUMG00010022969
 lncRNA gene Chr9:42305756-42309554 (-)
SPRET/EiJ ENSMSPG00010011501
 lncRNA gene Chr9:43068874-43072690 (-)
WSB/EiJ ENSIUOG00005022231
 lncRNA gene Chr9:41795962-41799767 (-)



Homology
less
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    2
Sequences &
Gene Models
less
  • All Sequences
    36
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 72229 NCBI Gene Model | MGI Sequence Detail 3814 C57BL/6J ±  kb
transcript NR_040720 RefSeq | MGI Sequence Detail 705 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    cDNA 2
Other
Accession IDs
less
MGI:6284372
References
more
  • Summaries
    All 11
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:262213 Lo KA, et al., Adipocyte Long-Noncoding RNA Transcriptome Analysis of Obese Mice Identified Lnc-Leptin, Which Regulates Leptin. Diabetes. 2018 Jun;67(6):1045-1056
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory