1700003M07Rik Gene Detail

Summary

• Symbol
  1700003M07Rik
• Name
  RIKEN cDNA 1700003M07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1919475
  NCBI Gene: 72225
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:129854167-129858931 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 63.43 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  75 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919475	lncRNA gene	Chr4:129853562-129875613 (+)
129S1/SvImJ	ENSMUSG00200021518	lncRNA gene	Chr4:123295448-123300204 (+)
A/J	ENSMUSG00195046109	lncRNA gene	Chr4:124629144-124633939 (+)
AKR/J	ENSMUSG00220048398	lncRNA gene	Chr4:123620914-123625704 (+)
BALB/cJ	ENSMUSG00180050010	lncRNA gene	Chr4:122262822-122267614 (+)
C3H/HeJ	ENSMUSG00175047549	lncRNA gene	Chr4:123275395-123280185 (+)
C57BL/6NJ	ENSMUSG00215052263	lncRNA gene	Chr4:124778491-124783257 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005929	lincRNA gene	Chr4:119772714-119775998 (+)
CAST/EiJ	ENSTCUG00005048249	lncRNA gene	Chr4:124158466-124163268 (+)
CBA/J	ENSMUSG00210053982	lncRNA gene	Chr4:122904392-122909182 (+)
DBA/2J	ENSMUSG00185053605	lncRNA gene	Chr4:124436751-124441537 (+)
FVB/NJ	ENSMUSG00205048843	lncRNA gene	Chr4:122663573-122668331 (+)
JF1/MsJ	ENSUMUG00000048920	lncRNA gene	Chr4:125092341-125097129 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190050685	lncRNA gene	Chr4:122669207-122673985 (+)
NZO/HlLtJ	ENSMUSG00225026652	lncRNA gene	Chr4:134147647-134152437 (+)
PWK/PhJ	ENSLUMG00010051134	lncRNA gene	Chr4:122120108-122124881 (+)
SPRET/EiJ	ENSMSPG00010045359	lncRNA gene	Chr4:124190266-124194990 (+)
WSB/EiJ	ENSIUOG00005046314	lncRNA gene	Chr4:122530689-122535473 (+)

Homology

• Gene Tree
  1700003M07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving 1700003M07Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  49
• RefSeq
  2

• Ensembl
  ENSMUSG00000085389 (Evidence)
• NCBI Gene
  72225

Representative Sequences			Length	Strain/Species
genomic	72225	NCBI Gene Model | MGI Sequence Detail	4765	C57BL/6J
transcript	NR_040647	RefSeq | MGI Sequence Detail	2205	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

References

• Summaries
  All 15

  Phenotypes 6
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:219771 Sheik Mohamed J, et al., Conserved long noncoding RNAs transcriptionally regulated by Oct4 and Nanog modulate pluripotency in mouse embryonic stem cells. RNA. 2010 Feb;16(2):324-37

TSS for 1700003M07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr39210	Chr4:129854553-129854574 (+)	397 bp