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Cimip1 Gene Detail
Summary
  • Symbol
    Cimip1
  • Name
    ciliary microtubule inner protein 1
  • Synonyms
    1700021F07Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919471
    NCBI Gene: 72221
  • Alliance
    genome feature page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:173364385-173370295 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 96.88 cM, cytoband H3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    316 from dbSNP Build 142
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919471
 protein coding gene Chr2:173364379-173370295 (+)
129S1/SvImJ ENSMUSG00200039356
 protein coding gene Chr2:170299101-170305391 (+)
A/J ENSMUSG00195024765
 protein coding gene Chr2:170627594-170633884 (+)
AKR/J ENSMUSG00220032614
 protein coding gene Chr2:169923231-169929523 (+)
BALB/cJ ENSMUSG00180035404
 protein coding gene Chr2:170060700-170066932 (+)
C3H/HeJ ENSMUSG00175034924
 protein coding gene Chr2:170832588-170838820 (+)
C57BL/6NJ ENSMUSG00215022735
 protein coding gene Chr2:170260509-170266766 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024750
 protein coding gene Chr2:165475630-165481463 (+)
CAST/EiJ no annotation
CBA/J ENSMUSG00210036755
 protein coding gene Chr2:170742858-170749091 (+)
DBA/2J ENSMUSG00185024208
 protein coding gene Chr2:170456440-170462673 (+)
FVB/NJ ENSMUSG00205015232
 protein coding gene Chr2:169513077-169519309 (+)
JF1/MsJ no annotation
LP/J ENSMUSG00230011411
 protein coding gene Chr2:172035434-172041724 (+)
NOD/ShiLtJ ENSMUSG00190036642
 protein coding gene Chr2:170140638-170146897 (+)
NZO/HlLtJ ENSMUSG00225002992
 protein coding gene Chr2:180027615-180033852 (+)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    CIMIP1, ciliary microtubule inner protein 1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CIMIP1, ciliary microtubule inner protein 1
  • Synonyms
    bA196N14.1, C20orf85, LLC1
  • Links
    NCBI Gene ID: 128602
    UniProt: Q9H1P6

  • Chr Location
    20q13.32; chr20:58150902-58161150 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 2 alleles in 2 genetic backgrounds
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Male mice homozygous for a null allele exhibit normal reproductive morphology and physiology.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    3
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    623
  • Tissues
    3
  • cDNA Data
    18
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 72221 NCBI Gene Model | MGI Sequence Detail 5911 C57BL/6J ±  kb
    transcript NM_028158 RefSeq | MGI Sequence Detail 641 Not Specified  
    polypeptide Q9DA42 UniProt | EBI | MGI Sequence Detail 136 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 19
      cDNA 18
      Primer pair 1

      Microarray probesets 2
    Other
    Accession IDs
    less
    MGI:7470734
    References
    more
    • Summaries
      All 30
      Developmental Gene Expression 1
      Gene Ontology 3
      Phenotypes 8
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:369140 Yamamoto K, et al., Eighteen genes primarily expressed in the testis are not required for male fertility in mice. Biol Reprod. 2024 Nov 11;111(5):1071-1081
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    10/06/2026
    MGI 6.29     		The Jackson Laboratory