Mospd4 Pseudogene Detail

Summary

• Symbol
  Mospd4
• Name
  motile sperm domain containing 4
• Synonyms
  2010013H21Rik

• Feature Type
  pseudogene
• IDs
  MGI:1919326
  NCBI Gene: 72076
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:46598282-46598857 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 24.59 cM, cytoband C
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919326	pseudogene	Chr18:46598001-46598883 (-)
129S1/SvImJ	ENSMUSG00200030943	pseudogene	Chr18:43617739-43618314 (-)
129S1/SvImJ	ENSMUSG00200029014	protein coding gene	Chr18:43617158-43618466 (-)
A/J	ENSMUSG00195024544	protein coding gene	Chr18:43795643-43796951 (-)
A/J	ENSMUSG00195025261	pseudogene	Chr18:43796224-43796799 (-)
AKR/J	ENSMUSG00220020297	protein coding gene	Chr18:43745534-43746842 (-)
AKR/J	ENSMUSG00220021223	pseudogene	Chr18:43746115-43746690 (-)
BALB/cJ	ENSMUSG00180007295	protein coding gene	Chr18:44284849-44286157 (-)
BALB/cJ	ENSMUSG00180007768	pseudogene	Chr18:44285430-44286005 (-)
C3H/HeJ	ENSMUSG00175011027	pseudogene	Chr18:43803349-43803924 (-)
C3H/HeJ	ENSMUSG00175010788	protein coding gene	Chr18:43802768-43804076 (-)
C57BL/6NJ	ENSMUSG00215008632	pseudogene	Chr18:43483387-43483962 (-)
C57BL/6NJ	ENSMUSG00215007466	protein coding gene	Chr18:43482806-43484114 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010262	pseudogene	Chr18:43466516-43467091 (-)
CAST/EiJ	ENSTCUG00005013723	pseudogene	Chr18:43232457-43233032 (-)
CBA/J	ENSMUSG00210022582	pseudogene	Chr18:43855202-43855777 (-)
CBA/J	ENSMUSG00210022261	protein coding gene	Chr18:43854621-43855929 (-)
DBA/2J	ENSMUSG00185027646	protein coding gene	Chr18:43754745-43756053 (-)
DBA/2J	ENSMUSG00185028392	pseudogene	Chr18:43755326-43755901 (-)
FVB/NJ	ENSMUSG00205016113	pseudogene	Chr18:43226333-43226908 (-)
FVB/NJ	ENSMUSG00205011910	protein coding gene	Chr18:43225752-43227060 (-)
JF1/MsJ	ENSUMUG00000031547	pseudogene	Chr18:43781579-43782154 (-)
LP/J	ENSMUSG00230029940	pseudogene	Chr18:45829234-45829809 (-)
LP/J	ENSMUSG00230026884	protein coding gene	Chr18:45828653-45829961 (-)
NOD/ShiLtJ	ENSMUSG00190028240	pseudogene	Chr18:43530869-43531444 (-)
NOD/ShiLtJ	ENSMUSG00190025313	protein coding gene	Chr18:43530288-43531596 (-)
NZO/HlLtJ	ENSMUSG00225027073	protein coding gene	Chr18:45699579-45700887 (-)
NZO/HlLtJ	ENSMUSG00225027846	pseudogene	Chr18:45700160-45700735 (-)
PWK/PhJ	ENSLUMG00010022199	pseudogene	Chr18:43882906-43883481 (-)
SPRET/EiJ	ENSMSPG00010013759	pseudogene	Chr18:44051319-44051894 (-)
WSB/EiJ	ENSIUOG00005009491	pseudogene	Chr18:43459786-43460361 (-)

Homology

• Protein SuperFamily
  VAMP-associated
• Gene Tree
  Mospd4
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Mospd4
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  41
• RefSeq
  2
• UniProt
  2
• CCDS
  CCDS50282.1

• Ensembl
  ENSMUSG00000046487 (Evidence)
• NCBI Gene
  72076

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000046487	Ensembl Gene Model | MGI Sequence Detail	576	C57BL/6J
transcript	ENSMUST00000180618	Ensembl | MGI Sequence Detail	576	Not Applicable
polypeptide	Q9D8A4	UniProt | EBI | MGI Sequence Detail	191	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR013783 Immunoglobulin-like fold
  IPR000535 Major sperm protein (MSP) domain
  IPR008962 PapD-like superfamily
  IPR016763 Vesicle-associated membrane-protein-associated protein

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 17

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67

TSS for Mospd4:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr153228	Chr18:46598847-46598886 (-)	-10 bp