1600012P17Rik Gene Detail

Summary

• Symbol
  1600012P17Rik
• Name
  RIKEN cDNA 1600012P17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1919275
  NCBI Gene: 72025
• Alliance
  genome feature page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr1:158795271-158808032 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 68.49 cM, cytoband H1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  372 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919275	lncRNA gene	Chr1:158795271-158808033 (-)
129S1/SvImJ	ENSMUSG00200006718	lncRNA gene	Chr1:156270979-156283744 (-)
A/J	ENSMUSG00195024734	lncRNA gene	Chr1:155620191-155632957 (-)
AKR/J	ENSMUSG00220014403	lncRNA gene	Chr1:155404662-155417427 (-)
BALB/cJ	ENSMUSG00180038182	lncRNA gene	Chr1:155819055-155831825 (-)
C3H/HeJ	ENSMUSG00175047697	lncRNA gene	Chr1:155887040-155899816 (-)
C57BL/6NJ	ENSMUSG00215040881	lncRNA gene	Chr1:155792906-155805671 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004534	lincRNA gene	Chr1:149592269-149605167 (-)
CAST/EiJ	ENSTCUG00005021095	lncRNA gene	Chr1:154403900-154416642 (-)
CBA/J	ENSMUSG00210021720	lncRNA gene	Chr1:155778053-155790831 (-)
DBA/2J	ENSMUSG00185047119	lncRNA gene	Chr1:160039375-160052146 (-)
FVB/NJ	ENSMUSG00205010964	lncRNA gene	Chr1:154920944-154933702 (-)
JF1/MsJ	ENSUMUG00000037718	lncRNA gene	Chr1:159194885-159207645 (-)
LP/J	ENSMUSG00230017365	lncRNA gene	Chr1:159648461-159661202 (-)
NOD/ShiLtJ	ENSMUSG00190045017	lncRNA gene	Chr1:155646014-155658769 (-)
NZO/HlLtJ	ENSMUSG00225006583	lncRNA gene	Chr1:163281971-163294730 (-)
PWK/PhJ	ENSLUMG00010046141	lncRNA gene	Chr1:154579292-154592061 (-)
SPRET/EiJ	ENSMSPG00010045918	lncRNA gene	Chr1:157959616-157971733 (-)
WSB/EiJ	ENSIUOG00005016001	lncRNA gene	Chr1:155216452-155229204 (-)

Homology

• Gene Tree
  1600012P17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving 1600012P17Rik
• Find Mice (IMSR)
  12 strains or lines available

Expression

• Assay Results
  644
• Tissues
  21
• cDNA Data
  42
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000047661 (Evidence)
• NCBI Gene
  72025

Representative Sequences			Length	Strain/Species
genomic	72025	NCBI Gene Model | MGI Sequence Detail	12762	C57BL/6J
transcript	NR_163823	RefSeq | MGI Sequence Detail	2474	C57BL/6
polypeptide	Q9DAY1	UniProt | EBI | MGI Sequence Detail	330	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 44

  cDNA 42

  Primer pair 2

  
  

  Microarray probesets 3

References

• Summaries
  All 19

  Developmental Gene Expression 1

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:327983 Wang J, et al., Placenta-specific lncRNA 1600012P17Rik is expressed in spongiotrophoblast and glycogen trophoblast cells of mouse placenta. Histochem Cell Biol. 2022 Jul;158(1):65-78

TSS for 1600012P17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr14509	Chr1:158808022-158808039 (-)	1 bp
Tssr14508	Chr1:158797313-158797319 (-)	10,716 bp
Tssr14507	Chr1:158797270-158797277 (-)	10,758 bp
Tssr14506	Chr1:158797258-158797266 (-)	10,770 bp
Tssr14505	Chr1:158797077-158797087 (-)	10,950 bp
Tssr14504	Chr1:158796396-158796402 (-)	11,633 bp
Tssr14503	Chr1:158796048-158796052 (-)	11,982 bp