1600020E01Rik Gene Detail

Summary

• Symbol
  1600020E01Rik
• Name
  RIKEN cDNA 1600020E01 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1919262
  NCBI Gene: 72012
• Alliance
  genome feature page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr6:86504312-86541431 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 37.72 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  785 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919262	lncRNA gene	Chr6:86501774-86559453 (+)
129S1/SvImJ	ENSMUSG00200044372	lncRNA gene	Chr6:83463507-83519081 (+)
A/J	ENSMUSG00195042633	lncRNA gene	Chr6:83147622-83203195 (+)
AKR/J	ENSMUSG00220034355	lncRNA gene	Chr6:82059183-82114794 (+)
BALB/cJ	ENSMUSG00180019067	lncRNA gene	Chr6:83532407-83588026 (+)
C3H/HeJ	ENSMUSG00175041471	lncRNA gene	Chr6:93826180-93881745 (-)
C57BL/6NJ	ENSMUSG00215032244	lncRNA gene	Chr6:83529107-83584731 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003892	antisense lncRNA gene	Chr6:82605501-82668546 (+)
CAST/EiJ	ENSTCUG00005018103	lncRNA gene	Chr6:83474843-83530131 (+)
CBA/J	ENSMUSG00210044881	lncRNA gene	Chr6:83338694-83394261 (+)
DBA/2J	ENSMUSG00185046633	lncRNA gene	Chr6:83885854-83941429 (+)
FVB/NJ	ENSMUSG00205045200	lncRNA gene	Chr6:82516735-82572308 (+)
JF1/MsJ	ENSUMUG00000045209	lncRNA gene	Chr6:82836225-82891461 (+)
LP/J	ENSMUSG00230051059	lncRNA gene	Chr6:85020102-85075663 (+)
NOD/ShiLtJ	ENSMUSG00190047076	lncRNA gene	Chr6:82962460-83018039 (+)
NZO/HlLtJ	ENSMUSG00225020301	lncRNA gene	Chr6:86985580-87041169 (+)
PWK/PhJ	ENSLUMG00010036734	lncRNA gene	Chr6:82248707-82303967 (+)
SPRET/EiJ	ENSMSPG00010044191	lncRNA gene	Chr6:84391624-84446851 (+)
WSB/EiJ	ENSIUOG00005035011	lncRNA gene	Chr6:83882851-83938520 (+)

Homology

• Gene Tree
  1600020E01Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  16 phenotype references
  

• All Mutations and Alleles
  76
• Gene trapped
  75
• Spontaneous
  1
• Genomic Mutations
  1 involving 1600020E01Rik
• Find Mice (IMSR)
  6 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  29

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  100
• RefSeq
  2

• Ensembl
  ENSMUSG00000097048 (Evidence)
• NCBI Gene
  72012

Representative Sequences			Length	Strain/Species
genomic	72012	NCBI Gene Model | MGI Sequence Detail	37120	C57BL/6J
transcript	NR_037961	RefSeq | MGI Sequence Detail	610	C57BL/6

Molecular
Reagents

• All nucleic 29

  cDNA 29

  
  

  Microarray probesets 2

References

• Summaries
  All 28

  Phenotypes 16
• Earliest
  J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
• Latest
  J:386463 Rias E, et al., Protocol for isolation of total RNA from mouse whole cochlea using organic solvents. STAR Protoc. 2026 Mar 20;7(1):104376

TSS for 1600020E01Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57480	Chr6:86502309-86502334 (+)	-1,990 bp
Tssr57481	Chr6:86502404-86502430 (+)	-1,895 bp
Tssr57482	Chr6:86502872-86502889 (+)	-1,431 bp
Tssr57483	Chr6:86503257-86503281 (+)	-1,043 bp
Tssr57484	Chr6:86503626-86503701 (+)	-648 bp
Tssr57485	Chr6:86503718-86503778 (+)	-564 bp
Tssr57486	Chr6:86504294-86504306 (+)	-12 bp
Tssr57487	Chr6:86516690-86516694 (+)	12,380 bp
Tssr57488	Chr6:86524939-86524989 (+)	20,652 bp