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Zbed5 Gene Detail
Summary
  • Symbol
    Zbed5
  • Name
    zinc finger BED-type containing 5
  • Synonyms
    2410018M08Rik, Chchd2l, Zbed5
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919220
    NCBI Gene: 71970
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:129924564-129932464 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 68.26 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    88 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919220
 protein coding gene Chr5:129924564-129937350 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030134
 protein coding gene Chr5:133993636-134005731 (+)
A/J no annotation
AKR/J MGP_AKRJ_G0030035
 protein coding gene Chr5:132514268-132516751 (+)
BALB/cJ MGP_BALBcJ_G0030112
 protein coding gene Chr5:129691726-129694199 (+)
C3H/HeJ MGP_C3HHeJ_G0029828
 protein coding gene Chr5:133072761-133076842 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030565
 protein coding gene Chr5:139118690-139132035 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027790
 protein coding gene Chr5:122727506-122736501 (+)
CAST/EiJ MGP_CASTEiJ_G0029238
 protein coding gene Chr5:132380044-132390588 (+)
CBA/J MGP_CBAJ_G0029798
 protein coding gene Chr5:144536831-144550297 (+)
DBA/2J MGP_DBA2J_G0029949
 protein coding gene Chr5:128305750-128314800 (+)
FVB/NJ MGP_FVBNJ_G0029904
 protein coding gene Chr5:127399499-127412687 (+)
LP/J MGP_LPJ_G0030037
 protein coding gene Chr5:134502116-134509934 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029936
 protein coding gene Chr5:147874566-147906441 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030605
 protein coding gene Chr5:132206690-132222333 (+)
PWK/PhJ MGP_PWKPhJ_G0028952
 protein coding gene Chr5:127236344-127245359 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028788
 protein coding gene Chr5:129764910-129773527 (+)
WSB/EiJ MGP_WSBEiJ_G0029311
 protein coding gene Chr5:132909493-132921403 (+)



Homology
more
  • Human Ortholog
    ZBED5, zinc finger BED-type containing 5
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ZBED5, zinc finger BED-type containing 5
  • Synonyms
    Buster1
  • Links
    NCBI Gene ID: 58486
    neXtProt AC: NX_Q49AG3
    UniProt: Q49AG3

  • Chr Location
    11p15.4; chr11:10852704-10858073 (-)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    23
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000034173 Ensembl Gene Model | MGI Sequence Detail 7901 C57BL/6J ±  kb
transcript ENSMUST00000041466 Ensembl | MGI Sequence Detail 2492 Not Applicable  
polypeptide ENSMUSP00000044533 Ensembl | MGI Sequence Detail 756 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR025398 Domain of unknown function DUF4371
    IPR026630 EPM2A-interacting protein 1/ZBED8-like
    IPR012337 Ribonuclease H-like superfamily
Molecular
Reagents
less
  • All nucleic 23
    cDNA 23

    Microarray probesets 5
References
more
  • Summaries
    All 32
    Gene Ontology 1
    Phenotypes 13
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:236599 Dickinson ME, et al., High-throughput discovery of novel developmental phenotypes. Nature. 2016 Sep 14;537(7621):508-514
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
03/21/2023
MGI 6.22 		The Jackson Laboratory