2310047K21Rik Gene Detail

Summary

• Symbol
  2310047K21Rik
• Name
  RIKEN cDNA 2310047K21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1919178
  NCBI Gene: 115489467
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr2:104647369-104657109 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  297 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919178	lncRNA gene	Chr2:104647369-104657109 (+)
129S1/SvImJ	ENSMUSG00200008093	lncRNA gene	Chr2:101469985-101472170 (+)
A/J	ENSMUSG00195030744	lncRNA gene	Chr2:101627480-101629665 (+)
AKR/J	ENSMUSG00220001645	lncRNA gene	Chr2:101378522-101380707 (+)
BALB/cJ	ENSMUSG00180034695	lncRNA gene	Chr2:101428529-101430714 (+)
C3H/HeJ	ENSMUSG00175031758	lncRNA gene	Chr2:101720454-101722593 (+)
C57BL/6NJ	ENSMUSG00215029929	lncRNA gene	Chr2:101532261-101534446 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005001751	lncRNA gene	Chr2:100800018-100802167 (+)
CBA/J	ENSMUSG00210038859	lncRNA gene	Chr2:101706282-101708467 (+)
DBA/2J	ENSMUSG00185005741	lncRNA gene	Chr2:101425275-101427460 (+)
FVB/NJ	ENSMUSG00205011402	lncRNA gene	Chr2:100752195-100754380 (+)
JF1/MsJ	ENSUMUG00000027887	lncRNA gene	Chr2:101129813-101131952 (+)
LP/J	ENSMUSG00230006476	lncRNA gene	Chr2:103174561-103176746 (+)
NOD/ShiLtJ	ENSMUSG00190015799	lncRNA gene	Chr2:101551295-101553480 (+)
NZO/HlLtJ	ENSMUSG00225008734	lncRNA gene	Chr2:111080780-111082965 (+)
PWK/PhJ	ENSLUMG00010025135	lncRNA gene	Chr2:101133334-101135484 (+)
SPRET/EiJ	ENSMSPG00010039397	lncRNA gene	Chr2:103177765-103179949 (+)
WSB/EiJ	ENSIUOG00005001553	lncRNA gene	Chr2:101230970-101233155 (+)

Homology

• Gene Tree
  2310047K21Rik
  

Expression

• cDNA Data
  4

• Other Mouse Links
  Allen Institute

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1

• Ensembl
  ENSMUSG00000120507 (Evidence)
• NCBI Gene
  115489467

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120507	Ensembl Gene Model | MGI Sequence Detail	9741	C57BL/6J
transcript	ENSMUST00000243845	Ensembl | MGI Sequence Detail	2411	Not Applicable

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:2139251

References

• Summaries
  All 12
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 2310047K21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19221	Chr2:104647215-104647270 (+)	-126 bp
Tssr19222	Chr2:104647377-104647416 (+)	28 bp
Tssr19224	Chr2:104651691-104651738 (+)	4,346 bp