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R3hcc1 Gene Detail
Summary
  • Symbol
    R3hcc1
  • Name
    R3H domain and coiled-coil containing 1
  • Synonyms
    1700020M16Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919093
    NCBI Gene: 71843
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:69934756-69945033 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 36.08 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    114 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919093
 protein coding gene Chr14:69934753-69952258 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021523
 protein coding gene Chr14:64268523-64283863 (-)
A/J MGP_AJ_G0021482
 protein coding gene Chr14:62952417-62962598 (-)
AKR/J MGP_AKRJ_G0021458
 protein coding gene Chr14:64835542-64847532 (-)
BALB/cJ MGP_BALBcJ_G0021488
 protein coding gene Chr14:62712659-62722800 (-)
C3H/HeJ MGP_C3HHeJ_G0021265
 protein coding gene Chr14:64558607-64569556 (-)
C57BL/6NJ MGP_C57BL6NJ_G0021927
 protein coding gene Chr14:67185447-67195616 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019467
 protein coding gene Chr14:60798428-60808745 (-)
CAST/EiJ MGP_CASTEiJ_G0020782
 protein coding gene Chr14:61107532-61117689 (-)
CBA/J MGP_CBAJ_G0021232
 protein coding gene Chr14:69282250-69297288 (-)
DBA/2J MGP_DBA2J_G0021355
 protein coding gene Chr14:62336762-62347257 (-)
FVB/NJ MGP_FVBNJ_G0021334
 protein coding gene Chr14:61755621-61767931 (-)
LP/J MGP_LPJ_G0021425
 protein coding gene Chr14:65543023-65554563 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021363
 protein coding gene Chr14:68223922-68235033 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0021950
 protein coding gene Chr14:64098785-64109501 (-)
PWK/PhJ MGP_PWKPhJ_G0020526
 protein coding gene Chr14:59090664-59101546 (-)
SPRET/EiJ MGP_SPRETEiJ_G0020359
 protein coding gene Chr14:60031855-60043889 (-)
WSB/EiJ MGP_WSBEiJ_G0020835
 protein coding gene Chr14:64396137-64406310 (-)



Homology
more
  • Human Ortholog
    R3HCC1, R3H domain and coiled-coil containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    R3HCC1, R3H domain and coiled-coil containing 1
  • Links
    NCBI Gene ID: 203069
    neXtProt AC: NX_Q9Y3T6
    UniProt: Q9Y3T6

  • Chr Location
    8p21.3; chr8:23270120-23296279 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    7
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    2
  • Gene trapped
    3
  • Targeted
    1
  • Genomic Mutations
    1 involving R3hcc1
  • Incidental Mutations
    APF , CvDC
  • Find Mice (IMSR)
    18 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    49
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000034194 Ensembl Gene Model | MGI Sequence Detail 10278 C57BL/6J ±  kb
transcript ENSMUST00000118374 Ensembl | MGI Sequence Detail 1726 Not Applicable  
polypeptide ENSMUSP00000113450 Ensembl | MGI Sequence Detail 488 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 49
    cDNA 49

    Microarray probesets 4
Other
Accession IDs
less
MGI:1353600
References
more
  • Summaries
    All 31
    Gene Ontology 1
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory