1700001J04Rik Gene Detail

Summary

• Symbol
  1700001J04Rik
• Name
  RIKEN cDNA 1700001J04 gene
• Synonyms
  4930429E18Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1919075
  NCBI Gene: 102633312
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:114076264-114077575 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 79.65 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  168 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919075	lncRNA gene	Chr11:114076250-114079559 (-)
129S1/SvImJ	ENSMUSG00200034468	lncRNA gene	Chr11:111425936-111427279 (-)
A/J	ENSMUSG00195021985	lncRNA gene	Chr11:111149117-111150461 (-)
AKR/J	ENSMUSG00220035317	lncRNA gene	Chr11:111252329-111253667 (-)
BALB/cJ	ENSMUSG00180018974	lncRNA gene	Chr11:111442779-111444117 (-)
C3H/HeJ	ENSMUSG00175014218	lncRNA gene	Chr11:111401185-111402527 (-)
C57BL/6NJ	ENSMUSG00215020986	lncRNA gene	Chr11:110922854-110924192 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002740	antisense lncRNA gene	Chr11:110026635-110027954 (-)
CAST/EiJ	ENSTCUG00005042314	lncRNA gene	Chr11:110828896-110830218 (-)
CBA/J	ENSMUSG00210013851	lncRNA gene	Chr11:111121516-111122859 (-)
DBA/2J	ENSMUSG00185020677	lncRNA gene	Chr11:111435572-111436910 (-)
FVB/NJ	ENSMUSG00205041244	lncRNA gene	Chr11:111269982-111271329 (-)
JF1/MsJ	ENSUMUG00000053710	lncRNA gene	Chr11:111709241-111710566 (-)
LP/J	ENSMUSG00230050912	lncRNA gene	Chr11:112489137-112490480 (-)
NOD/ShiLtJ	ENSMUSG00190023869	lncRNA gene	Chr11:111439615-111440959 (-)
NZO/HlLtJ	ENSMUSG00225053740	lncRNA gene	Chr11:114539571-114540914 (-)
PWK/PhJ	ENSLUMG00010016725	lncRNA gene	Chr11:111240504-111241829 (-)
SPRET/EiJ	ENSMSPG00010038024	lncRNA gene	Chr11:111759819-111761152 (-)
WSB/EiJ	ENSIUOG00005018235	lncRNA gene	Chr11:111199053-111200395 (-)

Homology

• Gene Tree
  1700001J04Rik
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  50
• RefSeq
  2

• Ensembl
  ENSMUSG00000086135 (Evidence)
• NCBI Gene
  102633312

Representative Sequences			Length	Strain/Species
genomic	102633312	NCBI Gene Model | MGI Sequence Detail	1312	C57BL/6J
transcript	NR_166725	RefSeq | MGI Sequence Detail	826	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

Other
Accession IDs

MGI:1925376

References

• Summaries
  All 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 1700001J04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr111660	Chr11:114077570-114077582 (-)	-1 bp