3300002A11Rik Gene Detail

Summary

• Symbol
  3300002A11Rik
• Name
  RIKEN cDNA 3300002A11 gene
• Synonyms
  2700016B18Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1919073
  NCBI Gene: 100503812
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:99307290-99328087 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 50.00 cM, cytoband F1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  664 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919073	lncRNA gene	Chr12:99307238-99328087 (+)
129S1/SvImJ	ENSMUSG00200017841	lncRNA gene	Chr12:91077795-91098580 (+)
A/J	ENSMUSG00195022034	lncRNA gene	Chr12:93642209-93663007 (+)
AKR/J	ENSMUSG00220018047	lncRNA gene	Chr12:91534193-91554994 (+)
BALB/cJ	ENSMUSG00180039306	lncRNA gene	Chr12:92793057-92813862 (+)
C3H/HeJ	ENSMUSG00175036620	lncRNA gene	Chr12:95455933-95476730 (+)
C57BL/6NJ	ENSMUSG00215042528	lncRNA gene	Chr12:92104346-92125147 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002796	antisense lncRNA gene	Chr12:93947659-93968780 (+)
CAST/EiJ	ENSTCUG00005006382	lncRNA gene	Chr12:91739434-91760252 (+)
CBA/J	ENSMUSG00210015089	lncRNA gene	Chr12:92452098-92472896 (+)
DBA/2J	ENSMUSG00185047303	lncRNA gene	Chr12:94234204-94254999 (+)
FVB/NJ	ENSMUSG00205022498	lncRNA gene	Chr12:91605481-91626279 (+)
JF1/MsJ	ENSUMUG00000027712	lncRNA gene	Chr12:98953180-98974009 (+)
LP/J	ENSMUSG00230004940	lncRNA gene	Chr12:101342951-101363739 (+)
NOD/ShiLtJ	ENSMUSG00190005420	lncRNA gene	Chr12:93674224-93695021 (-)
NZO/HlLtJ	ENSMUSG00225033990	lncRNA gene	Chr12:103052810-103073638 (+)
PWK/PhJ	ENSLUMG00010013772	lncRNA gene	Chr12:92447702-92468479 (+)
SPRET/EiJ	ENSMSPG00010020424	lncRNA gene	Chr12:94873098-94893666 (+)
WSB/EiJ	ENSIUOG00005002218	lncRNA gene	Chr12:91429919-91450740 (+)

Homology

• Gene Tree
  3300002A11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  7
• Chemically induced (other)
  1
• Gene trapped
  4
• Targeted
  2
• Genomic Mutations
  1 involving 3300002A11Rik
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000033731 (Evidence)
• NCBI Gene
  100503812

Representative Sequences			Length	Strain/Species
genomic	100503812	NCBI Gene Model | MGI Sequence Detail	20798	C57BL/6J
transcript	NR_166805	RefSeq | MGI Sequence Detail	542	C57BL/6
polypeptide	Q9CXH4	UniProt | EBI | MGI Sequence Detail	142	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 4

Other
Accession IDs

MGI:1919851

References

• Summaries
  All 24

  Phenotypes 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

TSS for 3300002A11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr114661	Chr12:99307274-99307315 (+)	5 bp