2610017A05Rik Gene Detail

Summary

• Symbol
  2610017A05Rik
• Name
  RIKEN cDNA 2610017A05 gene
• Synonyms
  Gm44143

• Feature Type
  lncRNA gene
• IDs
  MGI:1919056
  NCBI Gene: 105242826
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:148733030-148734612 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  80 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919056	lncRNA gene	Chr6:148732950-148734612 (+)
129S1/SvImJ	ENSMUSG00200003797	unclassified gene	Chr6:146259502-146261164 (+)
A/J	ENSMUSG00195003862	unclassified gene	Chr6:145166127-145167789 (+)
AKR/J	ENSMUSG00220012622	unclassified gene	Chr6:143432256-143433918 (+)
BALB/cJ	ENSMUSG00180002601	unclassified gene	Chr6:145293187-145294848 (+)
C3H/HeJ	ENSMUSG00175002531	unclassified gene	Chr6:145223741-145225405 (+)
C57BL/6NJ	ENSMUSG00215003902	unclassified gene	Chr6:145390357-145392019 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001844	unclassified gene	Chr6:146541830-146543509 (+)
CAST/EiJ	ENSTCUG00005011182	unclassified gene	Chr6:146025750-146027381 (+)
CBA/J	ENSMUSG00210005297	unclassified gene	Chr6:145301310-145302972 (+)
DBA/2J	ENSMUSG00185016017	unclassified gene	Chr6:145925705-145927369 (+)
FVB/NJ	ENSMUSG00205000066	unclassified gene	Chr6:144280613-144282275 (+)
JF1/MsJ	ENSUMUG00000015028	unclassified gene	Chr6:144571326-144572975 (+)
LP/J	ENSMUSG00230005657	unclassified gene	Chr6:147032849-147034509 (+)
NOD/ShiLtJ	ENSMUSG00190002505	unclassified gene	Chr6:145776532-145778194 (+)
NZO/HlLtJ	ENSMUSG00225013804	unclassified gene	Chr6:149935062-149936724 (+)
PWK/PhJ	ENSLUMG00010002376	unclassified gene	Chr6:143651620-143653269 (+)
SPRET/EiJ	ENSMSPG00010016634	unclassified gene	Chr6:147615115-147616761 (+)
WSB/EiJ	ENSIUOG00005004879	unclassified gene	Chr6:145998723-146000385 (+)

Homology

• Gene Tree
  2610017A05Rik
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000107909 (Evidence)
• NCBI Gene
  105242826

Representative Sequences			Length	Strain/Species
genomic	105242826	NCBI Gene Model | MGI Sequence Detail	1583	C57BL/6J
transcript	NR_175862	RefSeq | MGI Sequence Detail	427	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5690535

References

• Summaries
  All 7
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 2610017A05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr59636	Chr6:148733024-148733035 (+)	0 bp
Tssr59637	Chr6:148733042-148733056 (+)	19 bp