4930447M23Rik Gene Detail

Summary

• Symbol
  4930447M23Rik
• Name
  RIKEN cDNA 4930447M23 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918902
  NCBI Gene: 108871
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr2:19349128-19357062 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 13.24 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  341 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918902	lncRNA gene	Chr2:19349058-19367269 (+)
129S1/SvImJ	ENSMUSG00200042546	lncRNA gene	Chr2:16303423-16311364 (+)
A/J	ENSMUSG00195020320	lncRNA gene	Chr2:16381645-16389583 (+)
AKR/J	ENSMUSG00220013948	lncRNA gene	Chr2:16372538-16380475 (+)
BALB/cJ	ENSMUSG00180038581	lncRNA gene	Chr2:16424885-16432827 (+)
C3H/HeJ	ENSMUSG00175023223	lncRNA gene	Chr2:16385997-16393935 (+)
C57BL/6NJ	ENSMUSG00215033206	lncRNA gene	Chr2:16475229-16483174 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005340	lincRNA gene	Chr2:15759164-15766250 (+)
CAST/EiJ	ENSTCUG00005004592	lncRNA gene	Chr2:16241198-16249096 (+)
CBA/J	ENSMUSG00210004141	lncRNA gene	Chr2:16423967-16431907 (+)
DBA/2J	ENSMUSG00185039555	lncRNA gene	Chr2:16323696-16331628 (+)
FVB/NJ	ENSMUSG00205014724	lncRNA gene	Chr2:16379622-16387560 (+)
JF1/MsJ	ENSUMUG00000004915	lncRNA gene	Chr2:16297719-16305628 (+)
LP/J	ENSMUSG00230020262	lncRNA gene	Chr2:18261693-18269631 (+)
NOD/ShiLtJ	ENSMUSG00190014936	lncRNA gene	Chr2:16401994-16409925 (+)
NZO/HlLtJ	ENSMUSG00225001720	lncRNA gene	Chr2:26012287-26020225 (+)
PWK/PhJ	ENSLUMG00010034730	lncRNA gene	Chr2:16410390-16418299 (+)
SPRET/EiJ	ENSMSPG00010015573	lncRNA gene	Chr2:16862623-16870452 (+)
WSB/EiJ	ENSIUOG00005016119	lncRNA gene	Chr2:16478490-16486430 (+)

Homology

• Gene Tree
  4930447M23Rik
  

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  92
• RefSeq
  1

• Ensembl
  ENSMUSG00000087674 (Evidence)
• NCBI Gene
  108871

Representative Sequences			Length	Strain/Species
genomic	108871	NCBI Gene Model | MGI Sequence Detail	7935	C57BL/6J
transcript	NR_126563	RefSeq | MGI Sequence Detail	2338	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 8
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930447M23Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr16410	Chr2:19349128-19349137 (+)	5 bp
Tssr16411	Chr2:19349631-19349669 (+)	522 bp