4833411C07Rik Gene Detail

Summary

• Symbol
  4833411C07Rik
• Name
  RIKEN cDNA 4833411C07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918874
  NCBI Gene: 71624
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr8:10949922-10952334 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 5.28 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  171 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918874	lncRNA gene	Chr8:10949722-10973782 (+)
129S1/SvImJ	ENSMUSG00200013602	lncRNA gene	Chr8:7831748-7855426 (+)
A/J	ENSMUSG00195011141	lncRNA gene	Chr8:8191203-8214876 (+)
AKR/J	ENSMUSG00220011727	lncRNA gene	Chr8:7920436-7944130 (+)
BALB/cJ	ENSMUSG00180004966	lncRNA gene	Chr8:7830263-7853947 (+)
C3H/HeJ	ENSMUSG00175008312	lncRNA gene	Chr8:7983164-8006841 (+)
C57BL/6NJ	ENSMUSG00215010119	lncRNA gene	Chr8:7864581-7888265 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020574	lncRNA gene	Chr8:7815653-7839444 (+)
CBA/J	ENSMUSG00210011101	lncRNA gene	Chr8:7824172-7847842 (+)
DBA/2J	ENSMUSG00185004362	lncRNA gene	Chr8:7956944-7980622 (+)
FVB/NJ	ENSMUSG00205005895	lncRNA gene	Chr8:7842392-7866074 (+)
JF1/MsJ	ENSUMUG00000045116	lncRNA gene	Chr8:7972201-7996046 (+)
LP/J	ENSMUSG00230023744	lncRNA gene	Chr8:10134659-10158342 (+)
NOD/ShiLtJ	ENSMUSG00190011794	lncRNA gene	Chr8:7941985-7965662 (+)
NZO/HlLtJ	ENSMUSG00225019227	lncRNA gene	Chr8:17991794-18015471 (+)
PWK/PhJ	ENSLUMG00010011678	lncRNA gene	Chr8:7891070-7914639 (+)
SPRET/EiJ	ENSMSPG00010017594	lncRNA gene	Chr8:8020356-8044798 (+)
WSB/EiJ	ENSIUOG00005004805	lncRNA gene	Chr8:7840907-7864542 (+)

Homology

• Gene Tree
  4833411C07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotypes from 1 allele in 1 genetic background
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Find Mice (IMSR)
  0 strains or lines available
• Comparison Matrix
  Gene Expression + Phenotype

Mice homozygous for a null allele display elevated glucose levels, insulin resistance, and impaired glucose tolerance.

Expression

• Assay Results
  597
• cDNA Data
  8

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  61
• RefSeq
  1

• Ensembl
  ENSMUSG00000109089 (Evidence)
• NCBI Gene
  71624

Representative Sequences			Length	Strain/Species
genomic	71624	NCBI Gene Model | MGI Sequence Detail	2413	C57BL/6J
transcript	NR_102285	RefSeq | MGI Sequence Detail	1202	C57BL/6

Molecular
Reagents

• All nucleic 8

  cDNA 8

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:285483 Pradas-Juni M, et al., A MAFG-lncRNA axis links systemic nutrient abundance to hepatic glucose metabolism. Nat Commun. 2020 Jan 31;11(1):644

TSS for 4833411C07Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr76183	Chr8:10949915-10949928 (+)	0 bp
Tssr76184	Chr8:10949947-10949956 (+)	30 bp
Tssr76185	Chr8:10952046-10952061 (+)	2,132 bp