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Slc38a9 Gene Detail
Summary
  • Symbol
    Slc38a9
  • Name
    solute carrier family 38, member 9
  • Synonyms
    4833412L08Rik, 6720411P22Rik, 9130023D20Rik, 9430067K09Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1918839
    NCBI Gene: 268706
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:112797285-112875283 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 63.93 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    762 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918839
 protein coding gene Chr13:112792723-112875286 (+)
129S1/SvImJ MGP_129S1SvImJ_G0020939
 protein coding gene Chr13:115226289-115309925 (+)
A/J MGP_AJ_G0020889
 protein coding gene Chr13:110630669-110710124 (+)
AKR/J MGP_AKRJ_G0020864
 protein coding gene Chr13:113972631-114054801 (+)
BALB/cJ MGP_BALBcJ_G0020889
 protein coding gene Chr13:111331720-111411027 (+)
C3H/HeJ MGP_C3HHeJ_G0020678
 protein coding gene Chr13:113769683-113851984 (+)
C57BL/6NJ MGP_C57BL6NJ_G0021325
 protein coding gene Chr13:118661055-118742546 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018894
 protein coding gene Chr13:105926795-106007831 (+)
CAST/EiJ MGP_CASTEiJ_G0020198
 protein coding gene Chr13:113385884-113469398 (+)
CBA/J MGP_CBAJ_G0020640
 protein coding gene Chr13:123243934-123333257 (+)
DBA/2J MGP_DBA2J_G0020763
 protein coding gene Chr13:110345815-110427979 (+)
FVB/NJ MGP_FVBNJ_G0020747
 protein coding gene Chr13:109038671-109118777 (+)
LP/J MGP_LPJ_G0020839
 protein coding gene Chr13:115276898-115361044 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020775
 protein coding gene Chr13:123516199-123599964 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0021361
 protein coding gene Chr13:113421791-113507964 (+)
PWK/PhJ MGP_PWKPhJ_G0019951
 protein coding gene Chr13:109082750-109164816 (+)
SPRET/EiJ MGP_SPRETEiJ_G0019773
 protein coding gene Chr13:109749098-109832886 (+)
WSB/EiJ MGP_WSBEiJ_G0020255
 protein coding gene Chr13:114027684-114108645 (+)



Homology
more
  • Human Ortholog
    SLC38A9, solute carrier family 38 member 9
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLC38A9, solute carrier family 38 member 9
  • Synonyms
    SNAT9, URLC11
  • Links
    NCBI Gene ID: 153129
    neXtProt AC: NX_Q8NBW4
    UniProt: Q8NBW4

  • Chr Location
    5q11.2; chr5:55625845-55773194 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    47
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    895
  • Tissues
    95
  • cDNA Data
    19
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000047789 Ensembl Gene Model | MGI Sequence Detail 77999 C57BL/6J ±  kb
transcript ENSMUST00000052514 Ensembl | MGI Sequence Detail 8910 Not Applicable  
polypeptide ENSMUSP00000052172 Ensembl | MGI Sequence Detail 560 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 19
    cDNA 19

    Microarray probesets 12
Other
Accession IDs
less
MGI:1918875, MGI:1924321, MGI:2145298, MGI:2443845
References
more
  • Summaries
    All 37
    Developmental Gene Expression 2
    Gene Ontology 7
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory