8430432A02Rik Gene Detail

Summary

• Symbol
  8430432A02Rik
• Name
  RIKEN cDNA 8430432A02 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918774
  NCBI Gene: 108167597
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:43131748-43132995 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 22.25 cM, cytoband C1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918774	lncRNA gene	Chr1:43131440-43133002 (+)
129S1/SvImJ	ENSMUSG00200002073	lncRNA gene	Chr1:40744692-40745939 (+)
A/J	ENSMUSG00195001896	lncRNA gene	Chr1:40452132-40453379 (+)
AKR/J	ENSMUSG00220003755	lncRNA gene	Chr1:40452385-40453632 (+)
BALB/cJ	ENSMUSG00180003487	lncRNA gene	Chr1:40472700-40473947 (+)
C3H/HeJ	ENSMUSG00175000108	lncRNA gene	Chr1:40459853-40461100 (+)
C57BL/6NJ	ENSMUSG00215003020	lncRNA gene	Chr1:40447790-40449037 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002329	antisense lncRNA gene	Chr1:37631919-37633188 (+)
CAST/EiJ	ENSTCUG00005001038	lncRNA gene	Chr1:40526349-40527600 (+)
CBA/J	ENSMUSG00210006154	lncRNA gene	Chr1:40211373-40212620 (+)
DBA/2J	ENSMUSG00185030167	lncRNA gene	Chr1:41312520-41313767 (+)
FVB/NJ	ENSMUSG00205003981	lncRNA gene	Chr1:40405127-40406374 (+)
JF1/MsJ	ENSUMUG00000002007	lncRNA gene	Chr1:40547371-40548623 (+)
LP/J	ENSMUSG00230001187	lncRNA gene	Chr1:41358346-41359593 (+)
NOD/ShiLtJ	ENSMUSG00190002841	lncRNA gene	Chr1:40431052-40432299 (+)
NZO/HlLtJ	ENSMUSG00225000607	lncRNA gene	Chr1:44594540-44595787 (+)
PWK/PhJ	ENSLUMG00010037083	lncRNA gene	Chr1:40063771-40065023 (+)
SPRET/EiJ	ENSMSPG00010013773	lncRNA gene	Chr1:41629118-41630368 (+)
WSB/EiJ	ENSIUOG00005003846	lncRNA gene	Chr1:40367276-40368523 (+)

Homology

• Gene Tree
  8430432A02Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 8430432A02Rik
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000041878 (Evidence)
• NCBI Gene
  108167597

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000041878	Ensembl Gene Model | MGI Sequence Detail	1248	C57BL/6J
transcript	ENSMUST00000039080	Ensembl | MGI Sequence Detail	1248	Not Applicable
polypeptide	Q9CRQ4	UniProt | EBI | MGI Sequence Detail	167	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 3

References

• Summaries
  All 15

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573