8430429K09Rik Gene Detail

Summary

• Symbol
  8430429K09Rik
• Name
  RIKEN cDNA 8430429K09 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918773
  NCBI Gene: 71523
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:3402437-3429831 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 2.42 cM, cytoband A1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  633 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918773	lncRNA gene	Chr11:3401694-3437132 (+)
129S1/SvImJ	ENSMUSG00200034423	lncRNA gene	Chr11:355461-383001 (+)
129S1/SvImJ	ENSMUSG00200031627	protein coding gene	Chr11:355566-374693 (+)
A/J	ENSMUSG00195024156	lncRNA gene	Chr11:262874-290359 (+)
A/J	ENSMUSG00195022824	protein coding gene	Chr11:262979-282052 (+)
AKR/J	ENSMUSG00220008903	lncRNA gene	Chr11:276000-303588 (+)
AKR/J	ENSMUSG00220008333	protein coding gene	Chr11:276105-295248 (+)
BALB/cJ	ENSMUSG00180024128	protein coding gene	Chr11:285943-305067 (+)
BALB/cJ	ENSMUSG00180027891	lncRNA gene	Chr11:285838-313390 (+)
C3H/HeJ	ENSMUSG00175010649	lncRNA gene	Chr11:275490-303071 (+)
C3H/HeJ	ENSMUSG00175009399	protein coding gene	Chr11:275595-294712 (+)
C57BL/6NJ	ENSMUSG00215028167	protein coding gene	Chr11:285914-305029 (+)
C57BL/6NJ	ENSMUSG00215033782	lncRNA gene	Chr11:285809-313399 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013286	unclassified non-coding RNA gene	Chr11:279619-285922 (+)
CAST/EiJ	ENSTCUG00005040257	lncRNA gene	Chr11:376065-403423 (+)
CBA/J	ENSMUSG00210017642	protein coding gene	Chr11:275337-294458 (+)
CBA/J	ENSMUSG00210018483	lncRNA gene	Chr11:275232-302709 (+)
DBA/2J	ENSMUSG00185018721	lncRNA gene	Chr11:372844-400424 (+)
DBA/2J	ENSMUSG00185016526	protein coding gene	Chr11:372949-392066 (+)
FVB/NJ	ENSMUSG00205036081	lncRNA gene	Chr11:246245-273754 (+)
FVB/NJ	ENSMUSG00205029832	protein coding gene	Chr11:246350-265460 (+)
JF1/MsJ	ENSUMUG00000046528	lncRNA gene	Chr11:528692-556064 (+)
LP/J	ENSMUSG00230036133	lncRNA gene	Chr11:1438685-1466204 (+)
LP/J	ENSMUSG00230031645	protein coding gene	Chr11:1438790-1457896 (+)
NOD/ShiLtJ	ENSMUSG00190028934	protein coding gene	Chr11:262897-281973 (+)
NOD/ShiLtJ	ENSMUSG00190040739	lncRNA gene	Chr11:262792-290263 (+)
NZO/HlLtJ	ENSMUSG00225026365	lncRNA gene	Chr11:3495796-3523330 (+)
NZO/HlLtJ	ENSMUSG00225025345	protein coding gene	Chr11:3495901-3515007 (+)
PWK/PhJ	ENSLUMG00010019295	lncRNA gene	Chr11:264542-287640 (+)
SPRET/EiJ	ENSMSPG00010008533	lncRNA gene	Chr11:348661-376258 (+)
WSB/EiJ	ENSIUOG00005007543	lncRNA gene	Chr11:276672-304179 (+)

Homology

• Gene Tree
  8430429K09Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  7
• Gene trapped
  7
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  69
• RefSeq
  3
• UniProt
  1

• Ensembl
  ENSMUSG00000034587 (Evidence)
• NCBI Gene
  71523

Representative Sequences			Length	Strain/Species
genomic	71523	NCBI Gene Model | MGI Sequence Detail	27395	C57BL/6J
transcript	NR_045276	RefSeq | MGI Sequence Detail	1838	C57BL/6
polypeptide	Q8C347	UniProt | EBI | MGI Sequence Detail	114	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 14

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for 8430429K09Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100052	Chr11:3402458-3402510 (+)	47 bp