5430427G11Rik Gene Detail

Summary

• Symbol
  5430427G11Rik
• Name
  RIKEN cDNA 5430427G11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918664
  NCBI Gene: 71414
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:43096063-43098021 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  141 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918664	lncRNA gene	Chr10:43096063-43098021 (-)
129S1/SvImJ	ENSMUSG00200009430	lncRNA gene	Chr10:39982696-39983976 (-)
A/J	ENSMUSG00195017792	lncRNA gene	Chr10:40258569-40259853 (-)
AKR/J	ENSMUSG00220030220	lncRNA gene	Chr10:39947763-39949047 (-)
BALB/cJ	ENSMUSG00180017522	lncRNA gene	Chr10:40342690-40343974 (-)
C3H/HeJ	ENSMUSG00175012428	lncRNA gene	Chr10:40137737-40139021 (-)
C57BL/6NJ	ENSMUSG00215010466	lncRNA gene	Chr10:39887084-39888368 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028371	lncRNA gene	Chr10:40339832-40341108 (-)
CBA/J	ENSMUSG00210025896	lncRNA gene	Chr10:40031255-40032539 (-)
DBA/2J	ENSMUSG00185007970	lncRNA gene	Chr10:40183844-40185128 (-)
FVB/NJ	ENSMUSG00205015288	lncRNA gene	Chr10:40099109-40100393 (-)
JF1/MsJ	ENSUMUG00000038156	lncRNA gene	Chr10:39991899-39993175 (-)
LP/J	ENSMUSG00230006330	lncRNA gene	Chr10:41972461-41973740 (-)
NOD/ShiLtJ	ENSMUSG00190032728	lncRNA gene	Chr10:40311915-40313199 (-)
NZO/HlLtJ	ENSMUSG00225019644	lncRNA gene	Chr10:46276756-46278040 (-)
PWK/PhJ	ENSLUMG00010008032	lncRNA gene	Chr10:40088269-40089544 (-)
SPRET/EiJ	ENSMSPG00010013749	lncRNA gene	Chr10:41126574-41127855 (-)
WSB/EiJ	ENSIUOG00005015738	lncRNA gene	Chr10:39866210-39867494 (-)

Homology

• Gene Tree
  5430427G11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000119988 (Evidence)
• NCBI Gene
  71414

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119988	Ensembl Gene Model | MGI Sequence Detail	1959	C57BL/6J
transcript	ENSMUST00000240950	Ensembl | MGI Sequence Detail	1959	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 8

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 5430427G11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr97468	Chr10:43097368-43097384 (-)	645 bp
Tssr97467	Chr10:43097352-43097365 (-)	662 bp
Tssr97466	Chr10:43097307-43097329 (-)	703 bp