5430402O13Rik MGI Mouse Gene Detail - MGI:1918631

Sequence Map

Chr6:50543623-50571845 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918631	lncRNA gene	Chr6:50543623-50601379 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004268	antisense lncRNA gene	Chr6:49687829-49716972 (+)
A/J	MGP_AJ_G0004246	antisense lncRNA gene	Chr6:47367620-47395846 (+)
AKR/J	MGP_AKRJ_G0004227	antisense lncRNA gene	Chr6:49032948-49061156 (+)
BALB/cJ	MGP_BALBcJ_G0004233	antisense lncRNA gene	Chr6:47713666-47741897 (+)
C3H/HeJ	MGP_C3HHeJ_G0004181	antisense lncRNA gene	Chr6:49055354-49084554 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004382	antisense lncRNA gene	Chr6:50801334-50829538 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003855	antisense lncRNA gene	Chr6:44974747-45000732 (+)
CAST/EiJ	MGP_CASTEiJ_G0004143	antisense lncRNA gene	Chr6:48775673-48805353 (+)
CBA/J	MGP_CBAJ_G0004175	antisense lncRNA gene	Chr6:52940626-52968852 (+)
DBA/2J	MGP_DBA2J_G0004191	antisense lncRNA gene	Chr6:47282638-47311152 (+)
FVB/NJ	MGP_FVBNJ_G0004207	antisense lncRNA gene	Chr6:46919870-46948096 (+)
LP/J	MGP_LPJ_G0004269	antisense lncRNA gene	Chr6:49644460-49672774 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004197	antisense lncRNA gene	Chr6:55652112-55681977 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004379	antisense lncRNA gene	Chr6:48951918-48980179 (+)
PWK/PhJ	MGP_PWKPhJ_G0004096	antisense lncRNA gene	Chr6:46858214-46886705 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004040	antisense lncRNA gene	Chr6:48272723-48306502 (+)
WSB/EiJ	MGP_WSBEiJ_G0004179	antisense lncRNA gene	Chr6:48918093-48947601 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	73183	NCBI Gene Model \| MGI Sequence Detail	28223	C57BL/6J	± kb
	transcript	NR_015581	RefSeq \| MGI Sequence Detail	1007	C57BL/6

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MGI:1920433

Summaries

All 12

Phenotypes 1
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563

TSS for 5430402O13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr56423	Chr6:50543700-50543730 (+)	92 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 04/30/2024 MGI 6.23