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5430431A17Rik Gene Detail
Summary
  • Symbol
    5430431A17Rik
  • Name
    RIKEN cDNA 5430431A17 gene
  • Synonyms
    Charme, Gm45123
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1918618
    NCBI Gene: 71368
  • Alliance
    gene page
  • Transcription Start Sites
    13 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:44133941-44134837 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    70 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918618
 lncRNA gene Chr7:44122960-44135599 (+)
129S1/SvImJ MGP_129S1SvImJ_G0007172
 lincRNA gene Chr7:44658089-44658967 (+)
A/J MGP_AJ_G0007168
 lincRNA gene Chr7:43840002-43840898 (+)
AKR/J MGP_AKRJ_G0007138
 lincRNA gene Chr7:45042348-45043226 (+)
BALB/cJ MGP_BALBcJ_G0007147
 lincRNA gene Chr7:43836978-43837871 (+)
C3H/HeJ MGP_C3HHeJ_G0007090
 lincRNA gene Chr7:45533620-45534498 (+)
C57BL/6NJ MGP_C57BL6NJ_G0007316
 lincRNA gene Chr7:46912318-46913210 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0006528
 lincRNA gene Chr7:46425261-46426168 (+)
CAST/EiJ MGP_CASTEiJ_G0006994
 lincRNA gene Chr7:36911318-36912219 (+)
CBA/J MGP_CBAJ_G0007073
 lincRNA gene Chr7:48441083-48441961 (+)
DBA/2J MGP_DBA2J_G0007094
 lincRNA gene Chr7:43514430-43515340 (+)
FVB/NJ MGP_FVBNJ_G0007117
 lincRNA gene Chr7:43250221-43251099 (+)
LP/J MGP_LPJ_G0007176
 lincRNA gene Chr7:45340943-45341821 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0007095
 lincRNA gene Chr7:47187888-47188766 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0007319
 lincRNA gene Chr7:44257750-44258644 (+)
PWK/PhJ MGP_PWKPhJ_G0006935
 lincRNA gene Chr7:36862812-36863753 (+)
SPRET/EiJ MGP_SPRETEiJ_G0006845
 lincRNA gene Chr7:32267884-32268796 (+)
WSB/EiJ MGP_WSBEiJ_G0007054
 lincRNA gene Chr7:44721324-44722211 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotypes from 1 allele in 1 genetic background
    3 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit myogenic defects and premature death.
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    • All Sequences
      28
    • RefSeq
      1
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 71368 NCBI Gene Model | MGI Sequence Detail 897 C57BL/6J ±  kb
    transcript NR_131001 RefSeq | MGI Sequence Detail 795 ZRU/MplStud  
    For the selected sequence
    Molecular
    Reagents
    less
    • All nucleic 3
      cDNA 3

      Microarray probesets 1
    Other
    Accession IDs
    less
    MGI:5753699
    References
    more
    • Summaries
      All 16
      Developmental Gene Expression 1
      Phenotypes 3
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:336298 Taliani V, et al., The long noncoding RNA Charme supervises cardiomyocyte maturation by controlling cell differentiation programs in the developing heart. Elife. 2023 Mar 6;12
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/23/2024
    MGI 6.23     		The Jackson Laboratory