5430427M07Rik Gene Detail

Summary

• Symbol
  5430427M07Rik
• Name
  RIKEN cDNA 5430427M07 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1918599
  NCBI Gene: 71349
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:91012622-91023410 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 44.12 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  421 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918599	lncRNA gene	Chr12:91012618-91053188 (+)
129S1/SvImJ	ENSMUSG00200017964	lncRNA gene	Chr12:82839786-82868089 (+)
A/J	ENSMUSG00195035961	lncRNA gene	Chr12:85456068-85484373 (+)
AKR/J	ENSMUSG00220018335	lncRNA gene	Chr12:83112966-83147027 (+)
BALB/cJ	ENSMUSG00180016844	lncRNA gene	Chr12:84485532-84522061 (+)
C3H/HeJ	ENSMUSG00175040529	lncRNA gene	Chr12:87227043-87255348 (+)
C57BL/6NJ	ENSMUSG00215022060	lncRNA gene	Chr12:83784414-83818476 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002794	antisense lncRNA gene	Chr12:86200499-86226701 (+)
CAST/EiJ	ENSTCUG00005006463	lncRNA gene	Chr12:83617229-83647889 (+)
CBA/J	ENSMUSG00210019158	lncRNA gene	Chr12:84190103-84221677 (+)
DBA/2J	ENSMUSG00185003076	lncRNA gene	Chr12:86048491-86076793 (+)
FVB/NJ	ENSMUSG00205000802	lncRNA gene	Chr12:83403067-83434642 (+)
JF1/MsJ	ENSUMUG00000052068	lncRNA gene	Chr12:90702445-90733155 (+)
LP/J	ENSMUSG00230005053	lncRNA gene	Chr12:93099870-93131445 (+)
NOD/ShiLtJ	ENSMUSG00190041406	lncRNA gene	Chr12:101922523-101954094 (-)
NZO/HlLtJ	ENSMUSG00225034198	lncRNA gene	Chr12:94868110-94899684 (+)
PWK/PhJ	ENSLUMG00010003761	lncRNA gene	Chr12:84170552-84204045 (+)
SPRET/EiJ	ENSMSPG00010001189	lncRNA gene	Chr12:86552109-86580992 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  5430427M07Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 5430427M07Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000085004 (Evidence)
• NCBI Gene
  71349

Representative Sequences			Length	Strain/Species
genomic	71349	NCBI Gene Model | MGI Sequence Detail	10789	C57BL/6J
transcript	NR_045858	RefSeq | MGI Sequence Detail	1023	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573